Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0375
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6324| Best HMM Match : MCM (HMM E-Value=0) 38 0.008
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 32 0.30
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37) 31 0.52
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26) 31 0.52
SB_24033| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_56851| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 31 0.91
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 31 0.91
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8) 29 2.1
SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_10302| Best HMM Match : VDE (HMM E-Value=4.4) 29 2.8
SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4) 28 4.9
SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2) 28 4.9
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 6.4
SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.4
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) 28 6.4
SB_23905| Best HMM Match : Sigma70_ner (HMM E-Value=0.4) 27 8.5
SB_11091| Best HMM Match : Astacin (HMM E-Value=1.3e-38) 27 8.5
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0) 27 8.5
SB_3793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
Length = 1592
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 517 RFKVVKIESTEPFTRGRWICMDY 585
RFKVV+I+ +P+ RGRW C D+
Sbjct: 1338 RFKVVRIQRNDPYVRGRWQCHDF 1360
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 32.3 bits (70), Expect = 0.30
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = +1
Query: 133 STDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFS-KDDVFYNASSTSLGCAPVIP 309
+TDAG D+ D +++ +D V+D N+T S DT S +D +++ T +
Sbjct: 414 ATDAGNDAVSDGNDTVSDSNDTVSD-SNDTVCDSNDTVSDSNDTVCDSNDTESDDNDTVN 472
Query: 310 TSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVTNAS 435
S+ A+ ++ + SV +SN+T +D + +V++++
Sbjct: 473 DSND---AVCDTNDTVSDSNDSVSDSNDT-VSDRNDTVSDSN 510
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 85 YCVCEIITSVTLGSRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDT 243
+C CE + T + G D+ D +++ +D V D N+T S S DT
Sbjct: 405 HCKCEPGYNATDAGNDAVSDGNDTVSDSNDTVSDSNDTVCD-SNDTVSDSNDT 456
>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
Length = 942
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +1
Query: 124 SRVSTDAGE-------DSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASST 282
S ++TD E DS DD D+ +D +D ++E PS S+D +K D S
Sbjct: 603 SSIATDTSEHPSDSSSDSGDDSDDESSDSDDEPSDSDDE-PSKSDDEPTKSDEERGDKSE 661
Query: 283 SLGCAPVIPTSSQY 324
G VI +SS++
Sbjct: 662 KDGERAVIDSSSRF 675
>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
Length = 1418
Score = 31.5 bits (68), Expect = 0.52
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +1
Query: 97 EIITSVTLGSRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNAS 276
+IIT ++G S D G +D DE +D S + F DT S DDVFY+
Sbjct: 456 DIITEDSVGEGESDDGGSAGFEDDDEEEEEDGSIM------MRRFLRDTSSGDDVFYSWE 509
Query: 277 STSLGCAPVIPTSS 318
+ + + +S+
Sbjct: 510 TEDIDSTTPVRSST 523
>SB_24033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 121 GSRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSED 240
G TD ED+ DD++ + DDI DIE++T + +D
Sbjct: 72 GIENDTDDEEDTEDDIEGNTEDDIDGDGDIEDDTITDGDD 111
>SB_56851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 30.7 bits (66), Expect = 0.91
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 139 DAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDD 258
D +D DD D+ DD D++++ + +D DD
Sbjct: 53 DDNDDDDDDYDDKDNDDYDNDDDVDDDNDDYDDDGGGSDD 92
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 121 GSRVSTDAGEDSADDLDESHTDDISRV-TDIENETPSFSEDTFSKDD 258
G VS+ G+D ADD D ++DD + DI + + ED DD
Sbjct: 28 GVHVSSSGGDDEADDDDNINSDDDAAADDDINGDYDADDEDINGGDD 74
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 30.7 bits (66), Expect = 0.91
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +1
Query: 115 TLGSRVSTDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTSLGC 294
T + S ++ D+++ D S+TD+ ++ +N + S S D +STS
Sbjct: 64 TSDNSTSDNSNSDNSNS-DNSNTDN----SNSDNSSSDNSSSDNSNSDNSNTDNSTSNNS 118
Query: 295 APVIPTSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVTNASA 438
P TS QDN+N+ S NSN +N + + N+++
Sbjct: 119 NPENSTSDNSNSNNSNQDNSNSD-DSKPDNSNTNNSNSDNSNTDNSNS 165
Score = 30.7 bits (66), Expect = 0.91
Identities = 28/102 (27%), Positives = 46/102 (45%)
Frame = +1
Query: 133 STDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTSLGCAPVIPT 312
+TD SAD+ + +++ + TD N S S++ S D +STS P T
Sbjct: 254 NTD-NSSSADNSNPDNSNSDNSNTDNSNSDNSSSDN--SNSDNSNTDNSTSNNSNPENST 310
Query: 313 SSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVTNASA 438
S QDN+N+ S NSN +N + + N+++
Sbjct: 311 SDNSNSNNSNQDNSNSD-DSKPDNSNTNNSNSDNSNSDNSTS 351
>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
Length = 213
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 334 IVGQDNANNQIGSSVPNSNNTEANDMHVSVTNASAGSIINLIGN 465
I+ +N NN ++ N+NN + +D + N + +IIN+I N
Sbjct: 136 IIINNNNNNDENNNNNNNNNDDDDDNNSDDDNNNINNIINIINN 179
>SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 139 DAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDD 258
D D DD+D+ TDD + D ++ + +DT+ DD
Sbjct: 428 DDDTDEHDDIDDD-TDDHDDIDDDHDDIEDYHDDTYDYDD 466
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 139 DAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDV 261
D G+DS DD+D+ TD + D ++ + T S DD+
Sbjct: 96 DDGKDSHDDIDDG-TDSHDDIDDGTDDHDDIDDGTDSHDDI 135
>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
Length = 578
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = -2
Query: 494 ISFIPS*GLAFPMRLIMLPALALVTLTCISFASVLLLF 381
+ F+P+ + P R++ +P + TC++F +++F
Sbjct: 249 VVFVPTRVVFVPTRVVFVPTCVVFVPTCVAFVPTIVIF 286
>SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 145 GEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDD 258
G D+ DD D+ DD D +N+ + +D DD
Sbjct: 36 GNDNGDDNDDDDNDDEGNGDDDDNDDDYYEDDGNGHDD 73
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 235 PRNLVFH-SLYQSPVICRRCEIHLDHQRSLRLHL 137
PR L H + S +C C I DH + L+LH+
Sbjct: 688 PRVLSMHLKSHHSEPVCLVCGIKFDHDKILKLHM 721
>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
Length = 323
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 142 AGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTS 285
+ +D +D+ DES+ D S +D NE+ +E S + N S S
Sbjct: 81 SSKDESDESDESNESDESNESDKSNESDESNESDESNESDESNESDKS 128
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 145 GEDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDDVFYNASSTSLG 291
G D +++ DES+ D S +D NE+ +E S + N S S G
Sbjct: 160 GSDESNESDESNGSDESNGSDESNESDESNESDESNESDESNESDESNG 208
>SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)
Length = 610
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 268 NASSTSLGCAPVIPTSSQYGLAIVGQDNANNQIGSSVPNSNNTEANDMHVSVTNASAGS 444
NA++T+ T++ A NANN ++ N+N AN + + TNA+A +
Sbjct: 497 NANATNANATNANATNANANNANANNANANN---ANANNANANNANATNANATNANANN 552
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 346 DNANNQIGSSVPNSNNTEANDMHVSVTNASAGSIINLIGN 465
+NANN ++ N+NN AN+ + + NA+ + N N
Sbjct: 255 NNANNANNANNANANNANANNANANNANANNANANNANAN 294
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 346 DNANNQIGSSVPNSNN---TEANDMHVSVTNASAGS 444
+NANN ++ N+NN T AN + + TNA+A +
Sbjct: 457 NNANNANANNADNANNANATNANANNANATNANANN 492
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 349 NANNQIGSSVPNSNNTEANDMHVSVTNASAGSIIN 453
NANN ++ +N T AN + + TNA+A + N
Sbjct: 549 NANNANANNANYANATNANATNANATNANANANAN 583
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 148 EDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDD 258
+D DD D+S DDIS D ++ S +D F DD
Sbjct: 76 DDDDDDDDDSQNDDISENNDNDD---SQKDDDFPNDD 109
>SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 280
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 238 LPRNLVFHSLYQSPVICRRCEIHLDHQRSLRLHLCS 131
L R+L HS + P C CE SL+ HLC+
Sbjct: 47 LTRHLRIHSC-EKPFKCDMCERWFTQSTSLKTHLCT 81
>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
Length = 317
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 232 RNLVFHSLYQSPVICRRCEIHLDHQRSLRLHL 137
++L +H P +C C DH+ L+ H+
Sbjct: 241 KDLKYHEKGCHPCVCNECNETFDHENKLKRHI 272
>SB_23905| Best HMM Match : Sigma70_ner (HMM E-Value=0.4)
Length = 322
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 133 STDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSK 252
S D D DD +E +DD V DI+ + S ED K
Sbjct: 19 SNDDEVDDDDDSEEDMSDDDRSVKDIQKFSSSNMEDEIEK 58
>SB_11091| Best HMM Match : Astacin (HMM E-Value=1.3e-38)
Length = 851
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 148 EDSADDLDESHTDDISRVTDIENETPSFSEDTFSKDD 258
+DS DD+D+S +TDI N+ E T + +D
Sbjct: 703 DDSGDDIDDSGIKGFQNITDI-NDNEENQEGTRNAED 738
>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 1329
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 169 DESHTDDISRVTDIENETPSFSEDTFSKDDVF 264
DES +DD+ + T E FS + +S +D F
Sbjct: 60 DESTSDDVEKSTPDAIEEDEFSPEEYSDEDFF 91
>SB_3793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 133 STDAGEDSADDLDESHTDDISRVTDIENETPSFSEDTFSK 252
S D D DD +E +DD V DI+ + S ED K
Sbjct: 19 SNDDEVDDDDDSEEDMSDDDRSVKDIQKFSSSNMEDEIEK 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,472
Number of Sequences: 59808
Number of extensions: 390613
Number of successful extensions: 1609
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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