Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0375
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.10 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 334 IVGQDNANNQIGSSVPNSNNTEANDMHVSVT-NASAGSIINLIGNAKPQ 477
           I+  DN    +  S+P  ++TE  D+ +S++ N S+G  +++  + KP+
Sbjct: 509 ILSMDNTQYNLDLSLPQLDSTELADLDISLSENLSSG--LSISDSTKPE 555


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 464 FPMRLIMLPALALVTLTCISFASVLLLFGTELPI 363
           F   L+ LPA+  + L C+ +     + G ++PI
Sbjct: 381 FAKLLLRLPAIRSIGLKCLEYLFFFKMIG-DVPI 413


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 464 FPMRLIMLPALALVTLTCISFASVLLLFGTELPI 363
           F   L+ LPA+  + L C+ +     + G ++PI
Sbjct: 381 FAKLLLRLPAIRSIGLKCLEYLFFFKMIG-DVPI 413


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 29  DVRNCMCLLMSFEDLHS 79
           D++NC  + + FE LH+
Sbjct: 322 DIQNCDSVKIKFETLHT 338


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 433 SAGSIINLIGNAKPQEGMKEIQEHVRNE 516
           S+ S++     +K  E ++ I EH+RNE
Sbjct: 434 SSDSVLLSPEASKATEAVEFIAEHLRNE 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,138
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)