Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0367
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 68 1e-12
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 35 0.013
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 32 0.068
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.16
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 2.5
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 27 2.5
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 26 4.4
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ... 26 4.4
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 5.9
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.9
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 68.1 bits (159), Expect = 1e-12
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Frame = +2
Query: 2 ELCTPELQERLTPMRNKFKELED-----------AKVQSSLSSGNKSHGD---SSKAKKK 139
E CTPEL ++L P+R+K +E+E K+Q S ++ + + A +
Sbjct: 320 EFCTPELSQKLIPVRDKLREIEKNDEEHERAAKRIKIQPS-EDEKEAEAECRLTQVATCQ 378
Query: 140 RVLPYWFENDVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARG---AGWLRCXXXXXXX 310
++ +D G+N +G Y L VL+H G S+SSGHY AW+ A W R
Sbjct: 379 SLVDPELADDEGANPTGLYDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSI 438
Query: 311 XXXXXXLKLSGGGDWHCAYLLLYGPK 388
L GGG+ AY+LLY K
Sbjct: 439 VPAEKIETLDGGGEADSAYILLYKAK 464
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 34.7 bits (76), Expect = 0.013
Identities = 11/25 (44%), Positives = 21/25 (84%)
Frame = +2
Query: 194 YRLQAVLTHRGRSSSSGHYVAWVAR 268
Y L+A+++H+G S+ +GHYVA++ +
Sbjct: 713 YNLKAIISHKGSSAHAGHYVAFIRK 737
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 32.3 bits (70), Expect = 0.068
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 NNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAG-WLR 286
N S +Y L VL H G S+ SGHY ++ G WL+
Sbjct: 366 NCSCWYELIGVLVHAGGSTRSGHYYSFCKSSNGVWLK 402
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 194 YRLQAVLTHRGRSSSSGHYVAWVAR--GAGWLR 286
Y L AV+ H G S+S GHY V + +GW R
Sbjct: 436 YDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFR 468
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 68 DAKVQSSLSSGNKSHGDSSKAKKKRVLP-YWFENDVGSNN 184
D + SSLS +K+ SSK +R+ P WF+N+ S +
Sbjct: 20 DKRSPSSLSQRSKTSTRSSKPFLQRLFPSTWFKNESSSRH 59
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 ELCTPELQERLTPMRNKFKELEDAKVQSS-LSSGNKSHGDSSKAKKKR 142
E +LQE+L+ N E +D KV+ + + S+G+ K KKK+
Sbjct: 8 EATAKDLQEKLSLKENDVVE-DDGKVEENDAAEEGASNGEKKKKKKKK 54
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 179 NNSGYYRLQAVLTHRGRSSSSGHYVAWV-ARGAGWL 283
N Y L +V+ H G GHYV+ V + GW+
Sbjct: 353 NAERMYYLSSVIVHVGGGPHRGHYVSIVRTKTYGWV 388
>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 89 LSSGNKSHGDSSKAKKKRVLPYWFENDVGSNNSGYYRLQ 205
LS+ +K+H ++ + +KR L W + G N+ ++++
Sbjct: 76 LSTKSKAHEEAQEGLRKRRLQQWMKFRQGPNSEDIWKMR 114
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 681 LRFYKN*S-SSRMIVKNG*NNELNPSNFFLNVPNTNTRTKLL 559
LRF K + ++RM +K N +FFLN TNT +K++
Sbjct: 396 LRFEKRLNGNNRMHIKQLIKVVYNLKSFFLNCLETNTNSKVI 437
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 481 LCERCGGFPSRIVCYVRDHGLVLILLGELQD 389
LCE C IVCY L L+LL +++D
Sbjct: 760 LCEICSLEVGPIVCYSSLKVLFLLLLSDMRD 790
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,912
Number of Sequences: 5004
Number of extensions: 41465
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -