Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0367
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06)                   33   0.16 
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)                   30   1.5  
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         29   4.7  
SB_59655| Best HMM Match : UCH (HMM E-Value=0.53)                      28   6.2  
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06)
          Length = 757

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 185 SGYYRLQAVLTHRGRSSSSGHYVAWV 262
           S  Y L AVL H G S+ SGHYVA +
Sbjct: 214 STVYELSAVLMHHGSSAYSGHYVAHI 239


>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 194 YRLQAVLTHRGRSSSSGHYVAWVARGA 274
           Y+L  VL H G S +SGHY  +V RG+
Sbjct: 337 YKLYGVLVHSGYSCNSGHYYCYV-RGS 362


>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
          Length = 711

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 77  VQSSLSSGNKSHGDSSKAKKKRVLPYWFENDVGSNNSGYYRLQAVLTHRGRSSSSGHYVA 256
           V S LS G  S   S+      +  Y + ++        Y L  ++ H G +S SGHY A
Sbjct: 237 VYSGLSPGFVSKITSNLETPLMLSVYDWSSEACRKKCTNYELFGIVMHSGMTSCSGHYQA 296

Query: 257 WV 262
           +V
Sbjct: 297 YV 298


>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 18  NYKRG*HRCEINSRSWK--MRKYNHRLAPVTRVTGTAARPRRSVSCPTGSKXXXXXXXXX 191
           +YK G  RC+INS S+K  +R+ +   AP    +G       S S  +G +         
Sbjct: 545 SYKSGIRRCDINSASYKSGIRRCDINSAPYK--SGIRRCDINSASYKSGIRRCDINSASY 602

Query: 192 XXGCRPCSRTAA 227
             G RPC   +A
Sbjct: 603 KSGIRPCDINSA 614


>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 2   ELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRV 145
           E CT    E++ P     K  +D+K++   + G+K  G  S    K V
Sbjct: 484 EKCTAHAAEKIDPKNKDAKSKQDSKLKLGSNKGDKGKGSGSWLANKLV 531


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
 Frame = +2

Query: 38  PMRNKFKELEDAKVQSS---LSSGNKSHGDSSKAKKKRVLPYWFENDV--GSNNSGYYRL 202
           P   KFKE     + SS   + +GN     SS        P    N    GS +  ++  
Sbjct: 230 PTAVKFKETSCVDLDSSNDCIETGNHDKNHSSSNNDSEYAPIDLNNYASDGSMSESFH-- 287

Query: 203 QAVLTHRGRSSSSGHYVAWV 262
               TH G  S S HY  WV
Sbjct: 288 ---YTHDGSMSESFHYTQWV 304


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 YRLQAVLTHRGRSSSSGHYVAW 259
           Y L +V+ H G SS SGHY  +
Sbjct: 866 YALTSVIVHSGTSSESGHYYCY 887


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 185  SGYYRLQAVLTHRGRSSSSGHYVAWV 262
            S +YRL+ +L H G+ +S GHY  ++
Sbjct: 1561 STHYRLRGILVHSGQ-ASGGHYYCYI 1585


>SB_59655| Best HMM Match : UCH (HMM E-Value=0.53)
          Length = 115

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 194 YRLQAVLTHRGRSSSSGHYVAWV 262
           YRL AVL H G+ ++ GHY A++
Sbjct: 27  YRLYAVLVHEGQ-ANGGHYWAYI 48


>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 17  ELQERLTPMRNKFKELEDAKVQSSLSSGNKSHG 115
           ELQ R+T ++NK KELE +   S+  + +  HG
Sbjct: 85  ELQFRITELKNKLKELEMSLPSSAGITDSIFHG 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,308,124
Number of Sequences: 59808
Number of extensions: 333112
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)