Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0367
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.3  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 134 KKRVLPYWFENDVGSNNSGY 193
           +KR LP++ ++D G  + G+
Sbjct: 264 RKRTLPHFIKDDYGPESRGF 283


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 56  KELEDAKVQSSLSSGNKSHGDSSKAKKKRV 145
           KELE   +Q+       +HG SSK +K  V
Sbjct: 82  KELEVLMMQNRKFCAEIAHGGSSKKRKSIV 111


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -1

Query: 511 VQNMNICWFYLCERCGGFPSRIVCYVRDHGLVLILLGELQDFRSVQQKVGAVPVTSP 341
           V + +I ++  C    G   R+ CY + H   +  + +L D    +  V  V  T P
Sbjct: 194 VVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFVRKVHATKP 250


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 36  HRCEINSRSW 65
           HRC IN  SW
Sbjct: 181 HRCRINFGSW 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,955
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)