Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0367
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 87 8e-18
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 83 2e-16
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 35 0.058
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 34 0.10
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 34 0.10
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 34 0.10
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 33 0.13
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 33 0.23
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 32 0.41
At2g34357.1 68415.m04206 expressed protein 32 0.41
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 31 0.72
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 28 5.0
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 28 5.0
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 28 5.0
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 27 8.8
At5g07970.1 68418.m00926 dentin sialophosphoprotein-related cont... 27 8.8
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 27 8.8
At2g32310.1 68415.m03950 expressed protein 27 8.8
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 87.4 bits (207), Expect = 8e-18
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Frame = +2
Query: 2 ELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRVLPYWF-ENDVGS 178
+LC+ +L+++L R K +++E K+ S+ + S GD K E+ G
Sbjct: 391 DLCSEDLRKKLEAPRQKLRDIEGQKLGLQASAKSSSKGDDVKMTDAEGSSNQSGESSTGD 450
Query: 179 NN-------SGYYRLQAVLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLK 334
+G Y L +VLTH+GRS+ SGHYVAWV + +G W++ +K
Sbjct: 451 QQEGASPHMTGIYDLVSVLTHKGRSADSGHYVAWVKQESGKWVQYDDANTSLQRGEDIIK 510
Query: 335 LSGGGDWHCAYLLLYGPKILEL 400
LSGGGDWH AY+++Y +++ +
Sbjct: 511 LSGGGDWHMAYIVMYKARLISM 532
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 83.0 bits (196), Expect = 2e-16
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Frame = +2
Query: 2 ELCTPELQERLTPMRNKFKELEDAKV--QSSLSSGNKSH---------GDSSKAKKKRVL 148
+LC+ +L+++L R K +E E K+ Q+S SG+K + + V
Sbjct: 337 DLCSEDLRKKLEAPRQKLREEEGKKLGLQTSAKSGSKDSDVKMTDAEASANGSGESSTVN 396
Query: 149 PY-WFENDVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXX 322
P ++ ++ +G Y L AVLTH+GRS+ SGHYVAWV + +G W++
Sbjct: 397 PQEGTSSEKETHMTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIQYDDDNPSMQREE 456
Query: 323 XXLKLSGGGDWHCAYLLLYGPKILEL 400
KLSGGGDWH AY+ +Y + + +
Sbjct: 457 DITKLSGGGDWHMAYITMYKARFVSM 482
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 194 YRLQAVLTHRGRSSSSGHYVAWVARGAG 277
Y L VL H GRSS SGHY +V +G
Sbjct: 352 YTLYGVLVHYGRSSHSGHYACFVRTSSG 379
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 158 FENDVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWLRC 289
+++ S+ S + + AV+TH+G S GHYV ++ W RC
Sbjct: 463 YDSSSSSSPSAEFEIFAVVTHKGMLES-GHYVTYLRLKGLWYRC 505
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 176 SNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAG-WLR 286
SN S Y L A +TH G S GHY R G WLR
Sbjct: 487 SNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLR 524
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 176 SNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAG-WLR 286
SN S Y L A +TH G S GHY R G WLR
Sbjct: 487 SNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLR 524
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 176 SNNSGYYRLQAVLTHRGRSSSSGHYVAWV 262
S N Y L AVL H+G + +SGHYVA +
Sbjct: 336 SQNKLTYDLSAVLIHKGSAVNSGHYVAHI 364
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 179 NNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWL 283
+ G Y+L +++H G S GHYVA + + W+
Sbjct: 736 DGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWV 770
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 194 YRLQAVLTHRGRSSSSGHYVAWVARGAG-WLRC 289
Y+L ++ H G S SGHY A+V G W C
Sbjct: 277 YKLFGIIVHSGFSPESGHYYAYVKDSLGRWYCC 309
>At2g34357.1 68415.m04206 expressed protein
Length = 1280
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 44 RNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRV 145
R+K KEL DA + S G++ G+SSK +KR+
Sbjct: 1149 RSKRKELSDADSDAKSSKGSRFSGNSSKKNQKRM 1182
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 158 FENDVGSNNSGYYRLQAVLTHRGRSSSSGHYVAW 259
++ S N G YRL V+ H GR + SGHY +
Sbjct: 412 YQKPEASKNHGMYRLVTVVEHFGR-TGSGHYTVY 444
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 194 YRLQAVLTHRGRSSSSGHYVAWVARGAGWL 283
Y L AV+ H G + GHYV+ V WL
Sbjct: 298 YSLFAVVVHVGSGPNHGHYVSLVKSHNHWL 327
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 517 NYVQNMNICWFYLCERCGGFPSRIVCYVRDHGLVL 413
NY + ++C F LC C P+ I +H L L
Sbjct: 462 NYHLHCSLCEFVLCYECATIPNEIHYKFDEHSLTL 496
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 194 YRLQAVLTHRGRSSSSGHYVAWVARGAGWL 283
Y L AV+ H G + GHYV+ V WL
Sbjct: 293 YSLFAVVVHVGSGPNHGHYVSLVKSHNHWL 322
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 53 FKELEDA---KVQSSLSSGNKSHGDSSKAKKKRV 145
F+++ D+ ++SS SGNK HG S KK+ V
Sbjct: 34 FRQISDSVTEHMESSSPSGNKDHGKSFIPKKEEV 67
>At5g07970.1 68418.m00926 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1097
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 17 ELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRVLPYWFENDVGSNNSGYY 196
+LQ++ R + L V SLSS N+SH S + W + D+ + N+ +
Sbjct: 207 QLQKQQLEAR-QLNSLHSNAVNGSLSSDNQSHPSISGVPLQDASNNWLQPDLMTGNTNW- 264
Query: 197 RLQAVLTHRGRSSSSG 244
+ ++ +SSSSG
Sbjct: 265 -MHRGISPIVQSSSSG 279
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 59 ELEDAKVQSSLSSGNKSHGDSSKAKKKRVLPYWFENDVGSNNSGYYRLQAV 211
E DA + S +SSG+ SS + KRV EN++ S SG+Y +AV
Sbjct: 166 EGRDASIVS-VSSGHSRGTFSSGKRSKRVFAP-MENEINSPVSGFYPPKAV 214
>At2g32310.1 68415.m03950 expressed protein
Length = 325
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 98 GNKSHGDSSKAKKKRVLPYWFEN--DVGSNNSGYYRLQAVLTHRGRSSSS 241
G+ DSS+ + LP W EN ++GS +SG V + SSSS
Sbjct: 194 GSSIAADSSQQQFSSNLPMWHENQLNIGSFDSGPSSSTVVSSSSSSSSSS 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,064,569
Number of Sequences: 28952
Number of extensions: 233597
Number of successful extensions: 741
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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