Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0365
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.2  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   1.6  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    26   2.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   3.7  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   4.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.5  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    25   8.6  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 120 KT*KVYAFKISLIEKGIYNKHL 55
           KT +V +F  SL EKGI N+HL
Sbjct: 445 KTCQVISFLASLKEKGIQNRHL 466


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 200 EQQAEEIE-VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFI 319
           EQ  EE+E +  S+Y+ DDN + +D    ++  +   ++++
Sbjct: 79  EQSFEELEKITASLYQPDDNLQTLDLSLAEFSLIKDAQNYL 119


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 242 EGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEI 379
           E DD F Q+    Y+ K M   K  + +  +G  YP  KP +  E+
Sbjct: 60  EEDDEFLQM----YRNKRMQEWKDQMSKAKFGSVYPISKPEYTAEV 101


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 200  EQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPS-FNLE 376
            +QQ EE+ VLK + E   N   ++ K     Y++ D   + ++   L+   +K   + L+
Sbjct: 1054 KQQKEELSVLKGVQELTIN--NLEEKV---NYLEADVKQLPKLKKELESLNDKDQLYQLQ 1108

Query: 377  IFYNQHLLATVKENILSILNTEAE 448
               N+ L A VKE + +I +   E
Sbjct: 1109 ATKNKELEAKVKECLNNIKSLTKE 1132


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 188 SDEAEQQAEEIEVLKSIYEGDD 253
           S+EAE +  E +  KS+YE DD
Sbjct: 237 SNEAEGEDSESQTSKSLYEWDD 258


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 374  EIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFECLRE 499
            EI+   H+L+    N LSIL    + W+          C RE
Sbjct: 1068 EIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPRE 1109


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 230 KSIYEGDDNFKQVDAKTYQYKYMD 301
           KS  + +D+++++DAKT + +Y D
Sbjct: 282 KSDSDDEDDYEKLDAKTMKDRYWD 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,448
Number of Sequences: 5004
Number of extensions: 36620
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)