Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0365
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238...    28   5.0  
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466...    28   5.0  
01_06_1059 - 34156139-34156238,34157113-34157189,34158146-341582...    28   5.0  
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428...    28   5.0  
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630...    27   8.7  
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553...    27   8.7  

>12_02_0233 -
           16023062-16023253,16023528-16023609,16023699-16023809,
           16023890-16024141,16024227-16024580,16024893-16025548,
           16025554-16026459,16026550-16026747
          Length = 916

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 308 KSFILEISWGLKYPTEKPSFNLEIFYNQHL----LATVKENILSI 430
           + F+L+ SW + +P + PS+     Y + L     A VKE+  S+
Sbjct: 368 RGFVLKESWKVGFPQDAPSYKKRDKYKEQLSDKIYAQVKEHFYSL 412


>09_04_0162 +
           15245354-15245458,15245558-15245629,15245793-15246617,
           15247787-15248474,15248805-15248821
          Length = 568

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 146 FQFHY*NCSRY*IMSDEAE---QQAEEIEVLKSIYEGDDNFKQVDAKTY 283
           F  H+   ++  ++SD A    QQ EEIE  KS    D NF + D   +
Sbjct: 166 FDQHFEQATKEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIF 214


>01_06_1059 -
           34156139-34156238,34157113-34157189,34158146-34158259,
           34158390-34158569,34159312-34159524
          Length = 227

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 356 KPSFNLEIFYNQHLLATVKENIL----SILNTEAEQWLGCAMTYTLFE 487
           +P  +LEIF    LL  +KE++L     +LN E ++ L     YTL E
Sbjct: 122 EPKIHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTL--LERYTLKE 167


>01_06_0900 -
           32841880-32842078,32842179-32842300,32842621-32842841,
           32843086-32843224,32843350-32843576,32843677-32843788,
           32843863-32844063,32845349-32845525
          Length = 465

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 278 TYQYKYMDGDKSFILEISWGLKYPTEKP-SFNLEIFYNQHLLATVKENILS 427
           +Y Y YM+G+   ++   W +KY  +   + ++  +   H ++ V  NI++
Sbjct: 321 SYNYHYMEGESMRVMYEPWFVKYKVDLVFAGHVHAYERTHRISNVAYNIVN 371


>12_02_0127 +
           13961726-13961947,13962050-13962121,13962288-13963058,
           13963401-13963573,13963973-13964083,13964114-13964460,
           13964627-13964652
          Length = 573

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 146 FQFHY*NCSRY*IMSDEAE---QQAEEIEVLKSIYEGDDNFKQVDAKTY 283
           F  H+   +   ++SD A    QQ EEIE  KS    D NF + D   +
Sbjct: 205 FDQHFEQATEEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIF 253


>05_02_0004 -
           5528713-5528718,5529039-5529390,5529802-5530339,
           5530354-5531731,5531895-5532015,5534226-5534545
          Length = 904

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 146 FQFHY*NCSRY*IMSDEAE---QQAEEIEVLKSIYEGDDNFKQVDAKTY 283
           F  H+   +   ++SD A    QQ EEIE  KS    D NF + D   +
Sbjct: 254 FDRHFEQATEEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIF 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,623,493
Number of Sequences: 37544
Number of extensions: 205930
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)