Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0365
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13564| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   7e-24
SB_32251| Best HMM Match : MFS_1 (HMM E-Value=2.5e-19)                 31   0.55 
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)                   29   1.7  
SB_38700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)                   28   3.8  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   27   6.7  
SB_51237| Best HMM Match : UPF0029 (HMM E-Value=0)                     27   8.9  

>SB_13564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score =  107 bits (256), Expect = 7e-24
 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
 Frame = +2

Query: 200 EQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKY-MDGD-KSFILEISWGLKYPTEKPSFNL 373
           E+Q EE+EVL+SIYE DD FK++D KT+QYK+  DG  KSF+LEISW   YP   P+ NL
Sbjct: 5   EEQEEELEVLRSIYEVDDRFKEIDDKTFQYKFGEDGHYKSFVLEISWPEDYPECAPNINL 64

Query: 374 EIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFECLRE 499
           + FYN+H+   VK ++L+ +  + E  LG AMT++LF+   E
Sbjct: 65  DAFYNKHISKDVKSSLLARVAEQCEMTLGGAMTFSLFDWANE 106


>SB_32251| Best HMM Match : MFS_1 (HMM E-Value=2.5e-19)
          Length = 509

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 108 LFMFYE*TSGLIFSNFIIEIVHDTESCLMKPSSRRRKLKY*NRFTR---AMTISNRWMLK 278
           +F FY     LI SN ++ ++  T+ C     S    LKY +R  +   A T+    +L 
Sbjct: 172 VFNFYTAPVWLILSNALLILLPLTKFCFKNTLSSHMALKYTHREAKELLAHTLMLVLLLF 231

Query: 279 LISTSIWTVISHLF 320
           L ++  W + S LF
Sbjct: 232 LATSCFWAITSDLF 245


>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
          Length = 534

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
 Frame = +2

Query: 191 DEAEQQAEEIEVLKSIYEGDDNFKQVDAK--TYQYKYMDGDKSFILEISWGL--KYPTEK 358
           D  E+Q EEIE LKSI+   + F ++ +    +  +  D      L++ +     YP E 
Sbjct: 2   DYFEEQREEIESLKSIF--SEEFAEISSSPPCFMVRIEDIPTPTPLQVKFTFPDSYPDEA 59

Query: 359 PSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTL 481
           P   +    +  L + +   ++  L   A++ LG AM +TL
Sbjct: 60  PLIEIP-NRSLGLPSDLLVELVQHLQQVAKESLGMAMVFTL 99


>SB_38700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 167 CSRY*IMSDEAEQQAEEIEVL--KSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGL 340
           C+R     DE     E+I++   K  Y+    F +   +T  Y+Y+DG++    ++  G+
Sbjct: 256 CTRGYRYLDEERGDPEDIDIWTKKETYQRVSIFGRRKRRTRGYRYLDGER----DVPEGI 311

Query: 341 KYPTEKPSF-NLEIF 382
           +  TEK ++  L IF
Sbjct: 312 EIWTEKETYQRLSIF 326


>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
          Length = 1252

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 305 DKSFILEISWGLKYPTEKPSFNLEIF 382
           + SF L  SWG+  P E PSF  E F
Sbjct: 599 EPSFSLSSSWGVCPPAEDPSFLTESF 624


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/85 (18%), Positives = 42/85 (49%)
 Frame = +2

Query: 185  MSDEAEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPS 364
            +S+E EQ+ EE+E  K + E ++     + +   +  +  + +  L I+   +  +++ +
Sbjct: 1772 ISEEREQETEELEEHKEVVESEETEMAEEEEVPAFADIPSEDTATLGITEEREVKSDEVA 1831

Query: 365  FNLEIFYNQHLLATVKENILSILNT 439
               E+F ++   +   E+  ++ NT
Sbjct: 1832 ECEEVFESEKTESFNNEDTFAVTNT 1856


>SB_51237| Best HMM Match : UPF0029 (HMM E-Value=0)
          Length = 456

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 203 QQAEEIEVLKSIYEGDDNFKQVDAKTYQYKY-MDGDKSFILEISWGLKYPTEKPS 364
           +Q EE+E L +IY G+D F  +D  +  Y+  +  +   +  ++  L  P + PS
Sbjct: 12  RQCEEVEALSAIY-GED-FASIDESSRMYEIRIKSENDPLYSLTMQLLLPPQYPS 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,263
Number of Sequences: 59808
Number of extensions: 239414
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)