Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0365
(506 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82053-3|CAB04837.2| 240|Caenorhabditis elegans Hypothetical pr... 35 0.029
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 34 0.068
AF016676-8|AAG24105.1| 502|Caenorhabditis elegans Hypothetical ... 31 0.36
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 30 0.84
Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF125956-9|AAK68289.1| 318|Caenorhabditis elegans Hypothetical ... 28 3.4
AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical ... 28 3.4
AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical ... 28 3.4
Z68748-11|CAL63997.1| 193|Caenorhabditis elegans Hypothetical p... 28 4.5
U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protei... 27 5.9
>Z82053-3|CAB04837.2| 240|Caenorhabditis elegans Hypothetical
protein T26E3.4 protein.
Length = 240
Score = 35.1 bits (77), Expect = 0.029
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Frame = +2
Query: 200 EQQAEEIEVLKSIYEGDD---------NFK-QVDAKTYQYK-YMDGDKSFILEISWGLKY 346
EQQ +EIE L++IY ++ N + + K+ QY+ D D L I + Y
Sbjct: 5 EQQEQEIEALEAIYSEEEIHVASRDYPNIELSIQLKSNQYEDPTDDDFDVELGIEFTENY 64
Query: 347 PTEKPSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFECLRERV 505
P E P L + + E+I L + AE+ LG M + + L++ +
Sbjct: 65 PDEIPIITLNGIEDAFTAERIAESI-DKLRSVAEENLGMVMVFAIVSALQDEI 116
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 33.9 bits (74), Expect = 0.068
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 311 SFILEISWGLKYPTEKPSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFEC 490
S IL + YP KP+ +++ Q L +N+L+IL A+ W GC + L
Sbjct: 73 SVILHVKCSEDYPQRKPA--VDLLDPQGLSKEDVQNLLTILRQMADTWEGCVVIAELAHR 130
Query: 491 LRE 499
+RE
Sbjct: 131 VRE 133
>AF016676-8|AAG24105.1| 502|Caenorhabditis elegans Hypothetical
protein F41B5.9 protein.
Length = 502
Score = 31.5 bits (68), Expect = 0.36
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 16/83 (19%)
Frame = +2
Query: 215 EIEVLKSIYEGDDNFKQVDAKTYQYK----------YMDGDKSFI------LEISWGLKY 346
++EV+KSI++ F+++ A+T +++ +M GD++ + +++SW Y
Sbjct: 245 QLEVIKSIWQTYGRFEKL-ARTAEFRRKKLFKNNNVFMVGDEACLDTENVEVDVSWFSDY 303
Query: 347 PTEKPSFNLEIFYNQHLLATVKE 415
E+ S+ ++ F+N+ L VKE
Sbjct: 304 TYEQVSYFMDCFHNEIFLQIVKE 326
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 200 EQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEI 328
++QAE ++L S+ E D++ +VDA QY ++ K F L+I
Sbjct: 40 KEQAEANQILMSLKEERDSWTKVDA-ILQYSQLNESKYFALQI 81
>Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical
protein F55C5.6 protein.
Length = 437
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +2
Query: 197 AEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLE 376
A Q+ EE+ ++ +I+EG D ++ + Y + Y +G + +G +Y + + E
Sbjct: 36 AAQRFEELGIVYTIFEGSD---RIGGRVYSFPYQNG------YLQFGAEYINGEDNDIYE 86
Query: 377 IFYNQHLLAT 406
I ++LL+T
Sbjct: 87 IVERKNLLST 96
>AF125956-9|AAK68289.1| 318|Caenorhabditis elegans Hypothetical
protein DC2.7b protein.
Length = 318
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 224 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 403
+LK +G D FK+++ + QY + + F ++ GLK+ E + +I LL
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157
Query: 404 TVKENIL 424
K N++
Sbjct: 158 KSKSNLV 164
>AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical
protein DC2.7a protein.
Length = 678
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 224 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 403
+LK +G D FK+++ + QY + + F ++ GLK+ E + +I LL
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157
Query: 404 TVKENIL 424
K N++
Sbjct: 158 KSKSNLV 164
>AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical
protein DC2.7c protein.
Length = 657
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 224 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 403
+LK +G D FK+++ + QY + + F ++ GLK+ E + +I LL
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157
Query: 404 TVKENIL 424
K N++
Sbjct: 158 KSKSNLV 164
>Z68748-11|CAL63997.1| 193|Caenorhabditis elegans Hypothetical
protein F13H10.9 protein.
Length = 193
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 191 DEAEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFN 370
DE + + ++ + I +D+ ++ D+KT + +DG + I + L P S N
Sbjct: 131 DEEAAKNKRLDTISEIAMSNDSLQRNDSKTNVFNNIDGSRKTISPMEVDLN-PGLSSSIN 189
Query: 371 LE 376
LE
Sbjct: 190 LE 191
>U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protein 1
protein.
Length = 306
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 427 NIEHRSGTMARLRHDVHAV*VPQGK 501
N+E + G +A++ HD+H + V QG+
Sbjct: 216 NLERQMGELAQMFHDLHIMVVSQGE 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,485,417
Number of Sequences: 27780
Number of extensions: 199410
Number of successful extensions: 424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -