Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0365
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.15 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 353 LLDTLDPMIFLE*MTYHRPYTCTDKF*HPPV*NCHRPRKSI-LILQFPPPAARLHQT*FS 177
           LL   D ++  E   +H  Y        PP  N     ++I    +  PP A ++ +   
Sbjct: 511 LLQEHDSVMLGEISPHHEYYDSKSSTETPPSYNQLNYNENIERFFKSKPPVATMYGSDEE 570

Query: 176 IVNNFNNEIGKN*PRS 129
           I+N+ N+E GK  P S
Sbjct: 571 IINSSNDEGGKTSPNS 586


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 182  IMSDEAEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKY-MDGDKSFILEISWGLKY 346
            +  ++A Q+ EE E++  IY+  D F  + +  +     +DG++  +L+ S   +Y
Sbjct: 1538 VSRNKAYQKVEENEIIFEIYKMGDRFIGLTSDKFDVSLALDGER-VMLKASEDYRY 1592


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 138 TQKFIHKT*KVYAFKISLIEKGIYNKH 58
           ++K+  +T     F ++ + KG+  KH
Sbjct: 45  SKKYFEQTLNELNFNLNYVNKGVTYKH 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,286
Number of Sequences: 438
Number of extensions: 2707
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)