Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0365
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    29   1.4  
At5g45480.1 68418.m05587 expressed protein contains Pfam domain,...    27   7.3  
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ...    27   9.6  
At1g74160.1 68414.m08589 expressed protein                             27   9.6  

>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 370 LRNIL--QSTLVSNSKRKHTINIEHRSGTMARLRHDVH 477
           LRN++  Q+T VSNS R   ++ +H S    + RH+ H
Sbjct: 17  LRNLIRYQTTRVSNSSRDFNLSQQHCSCFRPKRRHEAH 54


>At5g45480.1 68418.m05587 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 877

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = +2

Query: 251 DNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSF--NLEIFYNQHLLATVKENIL 424
           D F  ++   Y YKY +  K  ++++ +  +   E   F  +L+      +L      I 
Sbjct: 226 DGFTPLNILQYAYKYFNIFKGLVVDLIFTFQQRAESKRFFDSLKAEEALRILEVELNFIY 285

Query: 425 SILNTEAE---QWLGCAMTYTLFECL 493
           + L T+AE    W+G    +    CL
Sbjct: 286 AALYTKAEILHNWIGFLFRFIALGCL 311


>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
           mays];  contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 820

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 347 PTEKPSFNLEIFYNQHLLATVKENILSILNT 439
           PT KP+ +     N HL ATV +   ++ NT
Sbjct: 773 PTAKPNLSTVTTINNHLCATVNQITSALSNT 803


>At1g74160.1 68414.m08589 expressed protein
          Length = 1030

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 138  LIFSNFIIEIVHDTESCLMKPSSRRRKL 221
            L+F + + EIVH   S L   S RRR L
Sbjct: 999  LVFKDLVNEIVHAETSRLQAKSGRRRTL 1026


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,672,336
Number of Sequences: 28952
Number of extensions: 177608
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)