Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0354
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...   113   1e-26
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...   110   8e-26
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    46   2e-06
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    29   0.40 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    29   0.40 
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   6.6  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.6  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    24   8.7  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score =  113 bits (272), Expect = 1e-26
 Identities = 54/120 (45%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
 Frame = +1

Query: 82  MGQTLSEPVTEKQSATCQDSRFLVGSSCMQGWRVSMDDSHTHILSLPD----DPGTAFFA 249
           MGQTLSEPV +K S++  D     G S MQGWR+SM+D+H  +L+  D    +P T+FF 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 250 VYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEEDMLQEKVAG 429
           V+DGHGG  +A++  +HL   I ++P +  GN +EALK GFL  D A++++  +QE  +G
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQDRDMQEDPSG 120


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score =  110 bits (265), Expect = 8e-26
 Identities = 55/120 (45%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
 Frame = +1

Query: 82  MGQTLSEPVTEKQSATCQDSRFLVGSSCMQGWRVSMDDSHTHILSLP----DDPGTAFFA 249
           MGQTLSEPVTEK S    +   L G S MQGWR+SM+D+H+ ILS+      DP   FFA
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDP-VDFFA 59

Query: 250 VYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEEDMLQEKVAG 429
           VYDGHGG  +A+  G +L + +   P++  G+   ALK  FL+ D+A+L++D      +G
Sbjct: 60  VYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHTDPSG 119


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +1

Query: 169 QGWRVSMDDSHTHILSLPDDPGTAFFAVYDGHGGSNIAEHAGKHLHKYI 315
           Q WR SM+D+H  +     +    F AVYDGH G   +++  K+LHK +
Sbjct: 80  QRWRRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVL 128


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 190 DDSHTHILSLPDDPGTAFF-AVYDGHGGSNIAEHAGKHL 303
           +D H  ++    D G  +F  ++DGH G N +    +HL
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHL 136


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 241 FFAVYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQ 366
           F+ ++DGHGG+  +E    +L K I       L + E+ LK+
Sbjct: 87  FYGLFDGHGGTECSEFLSTNLGKII---ENQDLNDTEKILKE 125


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 371 KPCFNASSMLPRWYSGRAVIYLC 303
           K CF+  +  P W S    IYLC
Sbjct: 22  KVCFDCGAKNPTWSSTTFGIYLC 44


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 EYHLGNIEEALKQGFLDLDRAML 396
           E  +   EE +K  F+DLD+ +L
Sbjct: 240 ELEINEQEEKIKHSFIDLDKTLL 262


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 307 YVNVSQHVLLCLNLHDHRRLQKMQCPDHQVVTVYVCVSHPWTLASLACMMIRPRT 143
           Y+  + H+L  L + D  + +     DH V   Y+ V  P  L +L   +I+  T
Sbjct: 31  YLLTNDHLLQILQVGDSSKQRSWFVGDHVVSDGYLYVCTPIDLLALVLPIIQELT 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,959
Number of Sequences: 5004
Number of extensions: 33017
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)