Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0354
(430 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42) 45 2e-05
SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 44 5e-05
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 35 0.025
SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32) 29 1.6
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09) 28 2.9
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 3.8
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
Length = 375
Score = 45.2 bits (102), Expect = 2e-05
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Frame = +1
Query: 103 PVTEKQSATCQDSRFLVGSSCMQGWRVSMDDSHT------HILSLP-DDPGTAFFAVYDG 261
P K S T + S + + ++ R M+D H + LP D P A+FAV+DG
Sbjct: 30 PTFYKSSYTYETSVYAIKNT-----RRKMEDKHVIMPHFNSLFGLPKDSPNYAYFAVFDG 84
Query: 262 HGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLD 384
HGG + A A HLH ++ A+ E+ + + AL + F + D
Sbjct: 85 HGGIDAATFAATHLHCFL-AQNEHLIKDPGLALHETFQNTD 124
>SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 44.4 bits (100), Expect = 4e-05
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +1
Query: 151 VGSSCMQGWRVSMDDSHTHILSLPDDPGTAFFAVYDGHGGSNIAEHAGKHLHKYITARPE 330
VG + +QG + +D +L L DP +FAV+DGHGG + AE A LH+ +
Sbjct: 91 VGFNSLQGKKFVNEDRFK-LLEL--DPDFYYFAVFDGHGGVSSAEFAHDKLHEIVRRMHR 147
Query: 331 YHLGNIEEALKQGFLDLDRAMLE--EDMLQEK 420
++E+ L Q F + D + E ++ EK
Sbjct: 148 DGENDLEKILVQAFEECDTELKRHLEHLVSEK 179
>SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 44.0 bits (99), Expect = 5e-05
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +1
Query: 151 VGSSCMQGWRVSMDDSHTHIL----SLPDDPGTAFFAVYDGHGGSNIAEHAGKHLHKYIT 318
V S QG R M+D T IL + D G AF AV+DGHGG A A L + I
Sbjct: 22 VSSEAHQGGRKCMED-FTSILFDRQHIGKDIGQAFIAVFDGHGGREAAVFARSRLWETIK 80
Query: 319 ARPEYHLGNIE---EALKQGFLDLDRAM 393
+ ++ + E +A+K+GF+ R+M
Sbjct: 81 KQRGFYSSDPEHVVKAIKEGFMATHRSM 108
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 44.0 bits (99), Expect = 5e-05
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Frame = +1
Query: 175 WRVSMDDSHTHILSLPDDPGTAFFAVYDGHGGSNIAEHAGKHLHKYITARPE--YHLG-- 342
W+ +M+D HT +DP + FFAV+DG+ G+ A + K + + + E Y G
Sbjct: 550 WKTTMEDRHTFCDYFCNDPQSGFFAVFDGYNGATAAGTSAKTFPEVLARKVESVYRPGLA 609
Query: 343 ------NIEEALKQGFLDLDRAML 396
I AL++ + D+DR +L
Sbjct: 610 SEGVDAKITTALRETYEDVDRILL 633
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 238 AFFAVYDGHGGSNIAEHAGKHLHKYITAR-PEYHLGNIEEALKQGFLDLDRAMLEEDMLQ 414
A++AV+DGH G + A +HLH+ I +R P+ + ++ +K+ +D + +E L
Sbjct: 454 AYYAVFDGHAGPRASLFAAEHLHENIKSRMPKGSITGKDKEIKKCLVDA-YTLTDEQFLH 512
Query: 415 EKVAG 429
E G
Sbjct: 513 EASKG 517
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 35.1 bits (77), Expect = 0.025
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 259 GHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEEDMLQE--KVAG 429
G +AE+ KHL + Y GN ++AL FL +D +++ E+ L+E ++AG
Sbjct: 40 GGRSQEVAEYVSKHLPDVLRGDIGYKEGNTKQALIDTFLKVDESIVSEEGLKELKEIAG 98
>SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 283 EHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLE 399
E GK+L K +TA +L N+E+ L G ++DRA L+
Sbjct: 11 ETRGKNLSKNLTAWSNLYLTNLEKPLDPGLPEIDRAGLK 49
>SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)
Length = 435
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 208 ILSLPDDPGTAFFAVYDGHGGSNIAEHAGKHLHKYI 315
++ L G F V DGHGG+ A + K L YI
Sbjct: 51 VVRLLHQDGGYLFGVMDGHGGNACAHNVCKRLPDYI 86
>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
Length = 1338
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 235 TAFFAVYDGHGGSNIAEHAGKHLHKYITAR---PEYHLGNIEEALKQGFLDLDRAMLE-- 399
T + V+DGH G+++A+ A + L + + + ++ L+Q F +++ +
Sbjct: 109 TCLYGVFDGHDGASVADFAAQRLPAELLLQQLTDDMTDEEVQLVLRQAFFAVEKGFFQSI 168
Query: 400 EDMLQEK 420
+D L E+
Sbjct: 169 DDALAER 175
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 92 PFLSL*QRSSQQHVKIQGSWSDHHACKAGECPWMTHTHIYCHYL 223
PF+ + +S + VK GS S H G T +YCH++
Sbjct: 1025 PFILTQEHTSCRDVKFSGSSSPGHYLIYGSKICKTPLRLYCHFM 1068
>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1495
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 256 RRLQKMQCPDHQVVTVYVCVSHPWTLASLACMMIRPRTLN 137
R+ + CPDH T Y V W + C+ I RT N
Sbjct: 77 RKCDNLCCPDHNDTTGYT-VWSAWGPCNRTCLGISERTRN 115
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 371 KPCFNASSMLPRWYSGRAVIYLCKCFPACSAMFEPP*PS*TAKNAVPGSSGSD-SICVCE 195
K C +S L + R C+ C A+ P + + + G D I + E
Sbjct: 2861 KCCDESSCDLAFMFGERCYSVTCQSEKLCQAVMAKPTNLQPKISYLSKNYGGDRGISLAE 2920
Query: 194 SSMDTRQP-CMHDD 156
+ +DT+QP C DD
Sbjct: 2921 TGLDTKQPTCKEDD 2934
>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 97 SEPVTEKQSATCQDSRFLVGSSCMQ 171
+ P+T KQS+TC S L GS+ Q
Sbjct: 396 NRPITNKQSSTCYMSTNLCGSTADQ 420
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 108 DREAVSNMSRFKVLGRIIMHARLA--SVH 188
DRE VS+ +++G I HARLA S+H
Sbjct: 1465 DREKVSHARHARLVGLCIHHARLAGLSIH 1493
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,862
Number of Sequences: 59808
Number of extensions: 271467
Number of successful extensions: 753
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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