Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0353
         (592 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    25   0.63 
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    25   0.63 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   4.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   4.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.8  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 51  SDNEDETVPADPEKWDRSDVMRCVRWVAR 137
           S ++++ +P DP +W R  V + +  V +
Sbjct: 25  SFDDEDNLPKDPRQWTREHVAQWINLVTQ 53


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 51  SDNEDETVPADPEKWDRSDVMRCVRWVAR 137
           S ++++ +P DP +W R  V + +  V +
Sbjct: 25  SFDDEDNLPKDPRQWTREHVAQWINLVTQ 53


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 243 QAGRIYDAYIRHAHAS 290
           + GRI+ AY R  HAS
Sbjct: 303 ELGRIFRAYCRENHAS 318


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 452 GAPGICWEGPPGDGEFRLSDPDEVARRWGRRK 547
           G PG   + P        SDPD + +   RR+
Sbjct: 93  GTPGPLSQAPASQQSLDASDPDAMGKWCPRRE 124


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 452 GAPGICWEGPPGDGEFRLSDPDEVARRWGRRK 547
           G PG   + P        SDPD + +   RR+
Sbjct: 249 GTPGPLSQAPASQQSLDASDPDAMGKWCPRRE 280


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 327 HQASSSTPSEQLEFQMGMRL 386
           HQ S ++PS Q   ++G+RL
Sbjct: 156 HQDSRTSPSGQHLQELGLRL 175


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 327 HQASSSTPSEQLEFQMGMRL 386
           HQ S ++PS Q   ++G+RL
Sbjct: 156 HQDSRTSPSGQHLQELGLRL 175


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/14 (42%), Positives = 6/14 (42%)
 Frame = -1

Query: 250 PACSSPEHTSVHCC 209
           P C  P H    CC
Sbjct: 92  PTCDEPVHRPGRCC 105


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 92  MGQKRRDAVREMGGSHLQGGGAAETPAAGHR 184
           MG+     V     S  Q GG   T  AGH+
Sbjct: 331 MGRHCESKVNFCATSPCQNGGVCTTIHAGHK 361


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 327 HQASSSTPSEQLEFQMGMRL 386
           HQ S ++PS Q   ++G+RL
Sbjct: 156 HQDSRTSPSGQHLQELGLRL 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,568
Number of Sequences: 336
Number of extensions: 2690
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)