Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0353
(592 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 49 4e-08
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 0.97
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 21 6.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.0
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 48.8 bits (111), Expect = 4e-08
Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 371 DGYAALSARAGGGQVQLWQFLLEELAAG--APG-ICWEGPPGDGEFRLSDPDEVARRWGR 541
DG A G LW+FLL+ L P I W G F+L D V+R WG
Sbjct: 444 DGAAVKRKSREGSTTYLWEFLLKLLQDREYCPRYIKWTNRER-GVFKLVDSKAVSRLWGL 502
Query: 542 RKQKPNMNYDKLSRALR 592
K KP+MNY+ + RALR
Sbjct: 503 HKNKPDMNYETMGRALR 519
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 0.97
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 107 RDAVREMGGSHLQGGGAAETPAAGHRQGPSSAHR 208
R + + GS G G+AE ++G SSA R
Sbjct: 589 RKCMSPINGSGASGSGSAENLSSGSNNQTSSASR 622
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 363 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 393
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 363 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 393
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 363 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 393
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 363 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 393
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 363 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 393
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 363 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 393
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 21.4 bits (43), Expect = 6.8
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Frame = +3
Query: 126 WVARTFRVAAPRRHLLPDTGKD----LLALTAQQWTEVCSGDEQAGRIYDAY 269
W A + +AP K L + +W C G + +I+DAY
Sbjct: 32 WTATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCIGYYKLNKIHDAY 83
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 431 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 461
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 265 ASYIRPACSSPEHTSVHCCAVSARRSLPVSG 173
+ YIR A +P T SLP+SG
Sbjct: 431 SGYIRSAFGTPISTGRPATVEDTSASLPLSG 461
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 9.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 268 YASYIRPACSSPEHTSVHCCAVSARRSLPVSGS 170
Y Y P SV +V + R++PVSGS
Sbjct: 1824 YGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGS 1856
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,598
Number of Sequences: 438
Number of extensions: 2982
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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