Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0343
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CCX9 Cluster: Chromosome undetermined scaffold_169, w...    37   0.45 
UniRef50_A0BRL2 Cluster: Chromosome undetermined scaffold_123, w...    34   4.2  
UniRef50_Q9BSU1-2 Cluster: Isoform 2 of Q9BSU1 ; n=1; Homo sapie...    33   9.7  
UniRef50_Q83H17 Cluster: Sensor protein; n=2; Tropheryma whipple...    33   9.7  
UniRef50_A6LSL4 Cluster: Sporulation integral membrane protein Y...    33   9.7  
UniRef50_A7PJI4 Cluster: Chromosome chr12 scaffold_18, whole gen...    33   9.7  
UniRef50_O96204 Cluster: Putative uncharacterized protein PFB055...    33   9.7  

>UniRef50_A0CCX9 Cluster: Chromosome undetermined scaffold_169,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_169,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 603

 Score = 37.1 bits (82), Expect = 0.45
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 259 NFLKRSVPVYSCCRSRLPCRLAHCRCFPRTFHSSHPPTPYSSNYFIHCHAKITILALISR 80
           N L ++ P++SCC    PC   H      + H +H   P S  Y  +CH   ++  + + 
Sbjct: 540 NELIKASPIFSCCNWAFPCYECHDMI---STHKAHITVP-SQRYCQNCHETFSVNLMSTV 595

Query: 79  DIKFY 65
           D+K Y
Sbjct: 596 DVKCY 600


>UniRef50_A0BRL2 Cluster: Chromosome undetermined scaffold_123,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_123,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 567

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 24/83 (28%), Positives = 35/83 (42%)
 Frame = -3

Query: 259 NFLKRSVPVYSCCRSRLPCRLAHCRCFPRTFHSSHPPTPYSSNYFIHCHAKITILALISR 80
           N + ++ PV++CC    PC   H +      H +H   P S  Y   C    T+  L + 
Sbjct: 491 NDIIKASPVFTCCNQAYPCYECHDQV---ANHKAHITIP-SQRYCSICKEIFTVNLLSTV 546

Query: 79  DIKFYFHKFNTNEHSHRQTERHS 11
           D+K Y HK    +    Q   HS
Sbjct: 547 DVKCY-HK-GLVDQEQSQNNPHS 567


>UniRef50_Q9BSU1-2 Cluster: Isoform 2 of Q9BSU1 ; n=1; Homo
           sapiens|Rep: Isoform 2 of Q9BSU1 - Homo sapiens (Human)
          Length = 258

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 247 RSVPVYSCCRSRLPCRL---AHCRC-FPRTFHSSHPPTPYSS 134
           R+ P   CC+S LP RL   +H RC     F S  PPT Y+S
Sbjct: 156 RNKPQGRCCQSLLPARLVYVSHFRCQSTMLFSSPPPPTVYNS 197


>UniRef50_Q83H17 Cluster: Sensor protein; n=2; Tropheryma
           whipplei|Rep: Sensor protein - Tropheryma whipplei
           (strain Twist) (Whipple's bacillus)
          Length = 484

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 200 SGTLPLFSSHFSLFTPSNAIFKQLLY 123
           SGT PLF S F +F+P  A +K  +Y
Sbjct: 61  SGTFPLFESSFEVFSPGRASYKAHIY 86


>UniRef50_A6LSL4 Cluster: Sporulation integral membrane protein
           YlbJ; n=1; Clostridium beijerinckii NCIMB 8052|Rep:
           Sporulation integral membrane protein YlbJ - Clostridium
           beijerinckii NCIMB 8052
          Length = 393

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
 Frame = -3

Query: 190 CRCFPRTFHSSHPPTPYSSNYFIHCHAKITI------LALISRDIKFYFH 59
           C+ FP + ++S+    +SS+ F++ +  +TI      L++ +R +K +FH
Sbjct: 342 CKVFPTSIYTSNLQMSHSSSLFVYIYPALTILLLTLLLSIFNRTLKLFFH 391


>UniRef50_A7PJI4 Cluster: Chromosome chr12 scaffold_18, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr12 scaffold_18, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 792

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 375 TFEMFSRSSG---LYVAGPALWLGTLRDWRPLNQNGYDLFQAQTVLRLQLNFQNGHGND 542
           T +  SR+ G   +YVA    W GT RD+  ++  G +L  A+ +LR Q   +N  GND
Sbjct: 171 TTDEVSRARGRREIYVA----WRGTTRDYEWVDVLGAELESAEELLRPQEGIKNEEGND 225


>UniRef50_O96204 Cluster: Putative uncharacterized protein PFB0555c;
            n=4; Plasmodium|Rep: Putative uncharacterized protein
            PFB0555c - Plasmodium falciparum (isolate 3D7)
          Length = 4091

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = -1

Query: 300  NSQRYREKKGRNELIFLNVQYLFTLVVDPVCLAVWHIAVVFLALFTLHTLQRHIQAITLF 121
            N  R  EKK +NE+I   V+Y    +++ V      I  +FL +  ++ L    ++    
Sbjct: 3713 NKNREEEKKKKNEIIHNEVEYFLEAILNVVGKLSDRINFIFLKIEKINCLAIFEESYLYV 3772

Query: 120  TVMQRLQYLLLFLGTSNFI 64
             ++ ++ Y       +NF+
Sbjct: 3773 ELLTKISYYCNIYNINNFL 3791


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,227,053
Number of Sequences: 1657284
Number of extensions: 14474980
Number of successful extensions: 43371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43356
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)