Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0343
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.49 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.6  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   3.4  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.5  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   7.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 569 CSLLLFAP-LLIKCKFIYYNLNIFF 640
           C+ ++F   LL  C FI++N+++ F
Sbjct: 171 CAFIIFTMHLLFCCAFIFFNMHLLF 195


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 244 SVPVYSC-CRSRLPCRLAHCRCFPRTFHSSHPPTPYSSNYFIHCHAKITILALISR 80
           S+ + +C  R+  PC   H    P  F  S PP  + +++  H HA I +L L+S+
Sbjct: 421 SLLIAACGLRNGDPC-FFHDTIPPYLFFES-PPVVFLNDFISHQHAWIWLLWLLSQ 474


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 244 SVPVYSC-CRSRLPCRLAHCRCFPRTFHSSHPPTPYSSNYFIHCHAKITILALISR 80
           S+ + +C  R+  PC   H    P  F  S PP  + +++  H HA I +L L+S+
Sbjct: 421 SLLIAACGLRNGDPC-FFHDTIPPYLFFES-PPVVFLNDFISHQHAWIWLLWLLSQ 474


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 244 SVPVYSC-CRSRLPCRLAHCRCFPRTFHSSHPPTPYSSNYFIHCHAKITILALISR 80
           S+ + +C  R+  PC   H    P  F  S PP  + +++  H HA I +L L+S+
Sbjct: 421 SLLIAACGLRNGDPC-FFHDTIPPYLFFES-PPVVFLNDFISHQHAWIWLLWLLSQ 474


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 244 SVPVYSC-CRSRLPCRLAHCRCFPRTFHSSHPPTPYSSNYFIHCHAKITILALISR 80
           S+ + +C  R+  PC   H    P  F  S PP  + +++  H HA I +L L+S+
Sbjct: 421 SLLIAACGLRNGDPC-FFHDTIPPYLFFES-PPVVFLNDFISHQHAWIWLLWLLSQ 474


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 407 LRRGPGALAGHTPGLAATKPKR 472
           LR+G GA+  + P  +A+ PK+
Sbjct: 193 LRKGRGAIGAYGPEKSASIPKK 214


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 349 RKTCINYCSNFTGSILKFTA 290
           RK  + + S   GS+ KFTA
Sbjct: 260 RKELLRFASESRGSVAKFTA 279


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +2

Query: 635 FFEYQAKFLIFFL 673
           FF++ A+F+++FL
Sbjct: 148 FFQFYAQFIVYFL 160


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
          protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 4  ISGCDVPFVYGSVRSY 51
          I+GC  PFV G V+ +
Sbjct: 34 IAGCVSPFVIGYVKHF 49


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 720 LADWVYVTADSPIVTLRKNIKNLAWYSKNIFRL**INLHFIS 595
           L D V++   +PI+    +I+ L + +K  F    INL+ I+
Sbjct: 85  LNDVVFIFCSAPIIITILDIEILGYVNKAKFGKLLINLYTIN 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,168
Number of Sequences: 336
Number of extensions: 3848
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)