Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0343
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.1  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    26   6.5  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   8.6  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = -1

Query: 252 LNVQYLFTLVVDPVCLAVWHIAVVFLALFTLHTLQRHIQAITLFTVMQRLQYLLLFLGTS 73
           LN Q L +L +   CL +  IA  +  L +    ++HI+A  +   ++R+ Y    +   
Sbjct: 67  LNFQSLLSLDIFECCLQILGIATSYTILRSWLLSRKHIEA-WIELAIRRMFYSFCAIQDD 125

Query: 72  NFISTNSIRTNTPID 28
           + IS  +I T++  D
Sbjct: 126 SNISIYAIGTSSKTD 140


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 LLEYGVGGCEE*KVRGKQRQCARRQGKRDRQQE 230
           L E G    EE + +GK++Q   ++GKR+++ E
Sbjct: 201 LQETGDATVEELQNKGKEKQKELKKGKREKKDE 233


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 617 YYNLNIFFEYQAKFLIFFLKVTIGESAVTYTQSANKGYLKY 739
           Y +  +FFEY  KF+   L V   + A+  T+      ++Y
Sbjct: 211 YLHRQVFFEYDKKFVEPRLSVVKRDVAINTTRGPTTASIEY 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,908
Number of Sequences: 5004
Number of extensions: 62017
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)