Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0343
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27194| Best HMM Match : C2 (HMM E-Value=1e-22)                      29   4.0  
SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)                  29   4.0  
SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_42551| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_34878| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   28   6.9  
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 130 YFIHCHAKITILALISRDIKFYFHKFNTNEHSHR 29
           YFI+CHA +  L  I+R IK   H F ++  SHR
Sbjct: 45  YFIYCHATLFPLMSITRSIKL-CHAFRSHTWSHR 77


>SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = -3

Query: 166 HSSHPP--TPYSSNYFI-----HCHAKITILALISRDIKFYFHKFNTNEHSHRQTERHSP 8
           HS   P   P+  + FI     H H K+   + I R I+ + +  N  +H H   ERH  
Sbjct: 232 HSLSTPYMRPFPQSLFIQASIHHVHTKLLFKSSIPRRIELFTNPHNDWKHKHNMKERHIQ 291

Query: 7   KY 2
            Y
Sbjct: 292 MY 293


>SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 160 SHPPTPYSSNYFIHCHAKITILALISRDIKFYFHKFNTNEHSHRQTE 20
           S PPTP++S+Y++    KI ++ ++S      F +   NE    +T+
Sbjct: 75  SFPPTPFNSDYWLSFLCKIGLIHIVSNQKFVEFAEEVANEAKCSRTD 121


>SB_27194| Best HMM Match : C2 (HMM E-Value=1e-22)
          Length = 139

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 546 ASHCHDHFGNSVATSGLFEPEIGHIRFGLVAANPGVCP 433
           AS CH+  G  V ++    PE GH  +  V ANP  CP
Sbjct: 96  ASGCHERIGQVVLSASSDGPEFGH--WSQVIANPH-CP 130


>SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)
          Length = 644

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 163 SSHPPTPYSSNYF-IHCHAKITILALISRDIKFYFHKFNTN 44
           +++P T Y  +   +HC  K +   L+S D KF+F+  NTN
Sbjct: 167 ATNPVTNYQFDINNLHCGDKSSSCQLLSSDPKFHFNAGNTN 207


>SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 160 SHPPTPYSSNYFIHCHAKITILALISRDIKFYFHKFNTNEHSHRQTE 20
           S PPTP++S+Y++    KI ++ ++S      F +   NE    +T+
Sbjct: 471 SFPPTPFNSDYWLSFLCKIGLIHILSNQKFVEFAEEVANEAKCSRTD 517


>SB_42551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 175 RTFHSSHPPTPYSSNYFIHCHAKITILALISRD 77
           RTF +   PTP    ++IH  A+  +LALI RD
Sbjct: 114 RTFGTCLSPTPLPLEFYIHV-AQSQVLALIVRD 145


>SB_34878| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 1383

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +3

Query: 234 TGTERLRKLIHYDLFSHDIAVNFNIEPVKLLQ*FMQVFLQRTIPKIRTFEMFSRSSG--L 407
           T   RLR L  Y  +++ ++V+  ++P +  +  + +  +RT+ ++ T    + SSG  L
Sbjct: 403 TMATRLRTLCVYSTYTYTMSVSDKLDPQRTPRIPLGLKAKRTVHRV-TLNPSTASSGETL 461

Query: 408 YVAGPAL 428
           YVA P L
Sbjct: 462 YVAVPKL 468


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 154 PPTPYSSNYFIHCHAKITILALISRDIKFYFHKFNTNEHSHRQTE 20
           PPTP++S+Y++    KI ++ ++S      F +   NE    +T+
Sbjct: 755 PPTPFNSDYWLSFLCKIGLIHIVSNQKFVEFAEEVANEAKCSRTD 799


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,365,141
Number of Sequences: 59808
Number of extensions: 452306
Number of successful extensions: 1192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)