Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0343
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical...    28   8.0  

>U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical
           protein C13E3.1 protein.
          Length = 770

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -1

Query: 672 RKNIKNLAWYSKNIFRL**INLHFISRGANNNREQR*TSRAIASHCHDHFGNSVATSGLF 493
           +K ++ L W   NI      + H +    NN +++  T+RAIA+HC    G+S      F
Sbjct: 267 KKKMRKLGWIDSNIE-----SKHVL--WWNNAKDELLTARAIANHCVKITGDSSEPFATF 319

Query: 492 EPEIGHIRFG 463
           E  +G    G
Sbjct: 320 EEYLGKFENG 329


>Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical
           protein F41D3.2 protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -1

Query: 219 DPVCLAVWHIAVVFLALFTLHTLQRHIQAITLFTVMQRLQYLLLFLGTSNFISTNSIRTN 40
           D + L    I+ + LA+FT  T ++    I+  +++  +   LLF+     I  N I   
Sbjct: 330 DSILLICALISSIVLAIFTFETFEKWYLKISNSSLI--ILVTLLFVSNGGLIKKNQISNE 387

Query: 39  TPIDKRNVTA 10
             + +RN+T+
Sbjct: 388 IYMYQRNITS 397


>Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical
           protein K05D4.8 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 216 PVCLAVWHIAVVFLALFTLHTLQRHIQAITLFTVMQRLQYLLLFLGTSNFISTN 55
           P+ L +W  +   L    LH LQ HI    L  +  +  Y+ +FL   ++ + N
Sbjct: 202 PLILNIWKTSK-HLKSAQLHKLQNHIMCQFLLIIASKFIYIPIFLFNGDWFAVN 254


>U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical
           protein F22H10.6 protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 166 HSSHPPTPYSSNYFIHCHAKITILALISRDIKFYFHKFNTNEHSHRQTE-RHSP 8
           +S  P   Y  + F     K+  L ++S +  FY+   NTN +S    E  HSP
Sbjct: 160 NSDSPNFLYQRSTFFPLITKLFKLKILSENDHFYYSTLNTNANSCAAPELHHSP 213


>U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical
           protein T24C12.4 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -1

Query: 285 REKKGRNEL-IFLNVQYLF----TLVVDPVCLAVWHIAVVFLALFTLHTLQRHIQ 136
           RE + RN+    + V+ +F    T  + P    +W  AVVF A+F +H +    Q
Sbjct: 2   REVQNRNDWHCIIKVRAMFRRLGTFSITPQLSVMWKYAVVFSAIFLIHIVDAGFQ 56


>AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical
           protein Y59A8B.13 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 178 PRTFHSSHPPTPYSSNYFIHCHA 110
           P+   + HPP P S+ Y++  HA
Sbjct: 279 PQRLLTHHPPPPQSTRYYVSSHA 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,082
Number of Sequences: 27780
Number of extensions: 354560
Number of successful extensions: 1170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)