Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0343
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    28   0.11 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 188 PLFSSHFSLFTPSNAIFKQLLYSLSCKDYNTCSY 87
           PLF+   SLF  +NA++  ++Y +S   Y    +
Sbjct: 310 PLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF 343


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +3

Query: 303 NIEPVKLLQ*FMQVFLQRTIPKIRTFEMFSRSSGLYVAGPALWLGTLRDWRPLNQNG 473
           N+ P+   Q    V +Q  +PK+  F+ ++    L+     +W  +   W+P + +G
Sbjct: 58  NVRPISSHQIANNVTMQ-LLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDG 113


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 168 FTLHTLQRHIQAITLFTVMQRLQYLLLFLGTSNFI-STNSIRTNT 37
           +TL    R I    +      +Q + L +G SNF+ ST +  T T
Sbjct: 206 YTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLSSTRTAETGT 250


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 726 PLLADWVYVTADSPIVTLRKNIKNLAWY--SKNI 631
           PL  D V +      VTLR+  KN+  Y  +KN+
Sbjct: 69  PLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNL 102


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 126 K*LLEYGVGGCEE*KVRGKQRQCARRQGKRDR 221
           K +LEY +    E +  G +R  +R  G RDR
Sbjct: 59  KMILEYELRRIREIEKLGSERSKSRSPGSRDR 90


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 696 ADSPIVTLRKNIKNLAWY 643
           AD   VT +KNI  L W+
Sbjct: 27  ADKTYVTRQKNIYELFWH 44


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 696 ADSPIVTLRKNIKNLAWY 643
           AD   VT +KNI  L W+
Sbjct: 27  ADKTYVTRQKNIYELFWH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,461
Number of Sequences: 438
Number of extensions: 4550
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)