Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0343
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27290.1 68417.m03916 S-locus protein kinase, putative simila...    29   4.3  
At1g33090.1 68414.m04085 MATE efflux family protein similar to r...    28   7.5  

>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
           to S-receptor kinase gi|392557|gb|AAA62232; contains
           Pfam domains PF00954: S-locus glycoprotein family,
           PF00069: Protein kinase domain and PF01453: Lectin
           (probable mannose binding)
          Length = 772

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 417 GPALWLGTLRDWRPLNQNGYDLF 485
           G  LW G L D R  N+NG DL+
Sbjct: 387 GCILWFGDLIDIREYNENGQDLY 409


>At1g33090.1 68414.m04085 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 494

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
 Frame = -1

Query: 321 ILQVQY*NSQRYREK-KGRNELIFLNVQYLFTLVVDP---VCLAVWHIAVVFLALFTLHT 154
           I+Q+ Y  S   ++  +G   L F ++  +F L +     VCL +W+ +++ L    L  
Sbjct: 231 IVQLLYVTSGGCKDTWRGFTMLAFKDLWPVFKLSLSSGGMVCLELWYNSILVLLTGNLKN 290

Query: 153 LQRHIQAITLFTVMQRLQYLLLFLGTSNFISTNSIRTNTPIDKRN 19
            +  I A+ +   +  LQ +++ LG   F++  S+R +  + + N
Sbjct: 291 AEVAIDALAICINVNALQ-MMIALG---FLAAVSVRVSNELGRGN 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,665,367
Number of Sequences: 28952
Number of extensions: 319322
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)