Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0341
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 88 7e-19
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 44 1e-05
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 31 0.084
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 1.8
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 1.8
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 3.2
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 4.2
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 5.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.6
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 88.2 bits (209), Expect = 7e-19
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 358 ADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPI 531
ADVV+IPAGVPRKPGMTRDDLF TNA IVRD+A + P+A ++TNPVNSTVPI
Sbjct: 98 ADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVVTNPVNSTVPI 155
Score = 66.1 bits (154), Expect = 3e-12
Identities = 34/67 (50%), Positives = 44/67 (65%)
Frame = +2
Query: 122 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNT 301
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRG-APGVAADIGHINT 77
Query: 302 PAKVSGH 322
+ V G+
Sbjct: 78 TSNVVGY 84
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVN 516
+DA VVI AG +KPG TR DL N I ++I + AI+ + TNPV+
Sbjct: 86 KDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVATNPVD 140
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 31.5 bits (68), Expect = 0.084
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 465 NGQSNVTDNXSISVE*VITGHSRFTGYSCWDDYNISILMAADSSSGPLWPL 313
NG + D + SV V+TGH+R CW + +L A+ LW L
Sbjct: 45 NGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSSCDRFLLTASRDWKCILWDL 95
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 100 PCCTKWCKELFHHITEEL*SGGRWCR 177
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 224 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKMLML 367
++ RLALY+ A V P + + + + + SG+ +E SA + L++
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQLLKLLV 633
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 242 LYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAA 349
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 88 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 186
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 53 RVYTCIFELFPPDPPD 6
RV T + LFPPDP D
Sbjct: 199 RVKTALSALFPPDPKD 214
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 169 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 264
WC + +P F + S GD G R C+
Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,291
Number of Sequences: 5004
Number of extensions: 45526
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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