Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0341
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 95 4e-20
08_02_0774 - 21047696-21048889 93 1e-19
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 93 1e-19
07_03_1371 - 26100553-26101767 93 2e-19
01_06_1220 + 35493575-35494765 93 2e-19
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 91 5e-19
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 90 9e-19
02_01_0042 + 295608-296222,298479-298925 40 0.001
04_04_0587 + 26410808-26411338 31 0.79
05_04_0057 + 17543016-17543312 29 1.8
04_01_0527 - 6913266-6913802 29 1.8
10_03_0046 + 7357777-7357992 29 2.4
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 29 2.4
07_03_0730 + 21030123-21030338 29 2.4
01_06_1064 + 34237919-34238155 29 2.4
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 29 2.4
08_02_1015 - 23597445-23597628,23597654-23597877 29 3.2
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 29 3.2
04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742... 28 4.2
02_02_0442 - 10318576-10319109 28 4.2
01_04_0063 - 15574855-15575143,15575398-15575602,15575746-155759... 28 4.2
01_01_0220 + 1866989-1868393,1868465-1869153 28 4.2
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 5.6
01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858 28 5.6
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767... 27 7.4
11_01_0719 - 5924088-5924362,5924458-5924605 27 9.8
05_06_0098 + 25560158-25560925 27 9.8
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 27 9.8
02_01_0530 - 3853274-3853666 27 9.8
01_03_0142 + 13031297-13031568,13031724-13031952,13032608-13032715 27 9.8
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 94.7 bits (225), Expect = 4e-20
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = +1
Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPI 531
+ +D+V+IPAGVPRKPGMTRDDLFN NA IV+++ +IA P A+V+MI+NPVNSTVPI
Sbjct: 94 EGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNPVNSTVPI 153
Query: 532 DSEV 543
+EV
Sbjct: 154 AAEV 157
Score = 74.5 bits (175), Expect = 5e-14
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 83 ALKPAALAVQNGAKNFSTTS-QRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAP 259
+L +A V + +S+ S Q K IGQPL+LL+K NPLV+ L+LYDIA
Sbjct: 4 SLMRSASQVLRRRRGYSSASGQPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAG 63
Query: 260 VTPGVAADLSHMNTPAKVSGHKGPEELSAAIK 355
TPGVAAD+SH+N PA+V G G ++L A++
Sbjct: 64 -TPGVAADVSHINAPAQVKGFMGDDQLGEALE 94
>08_02_0774 - 21047696-21048889
Length = 397
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +1
Query: 361 DVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPIDSE 540
DVVVIPAGVPRKPGMTRDDLFN NA IV+ + ++A N P+A + +I+NPVNSTVPI +E
Sbjct: 145 DVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNCPEAFIHIISNPVNSTVPIAAE 204
Query: 541 V 543
V
Sbjct: 205 V 205
Score = 70.1 bits (164), Expect = 1e-12
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +2
Query: 119 AKNFSTTS-QRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHM 295
AK+ S S + ++K IGQPL LL+K +PLV+ L LYDIA V GVAADLSH
Sbjct: 64 AKSGSQISPEASYKVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIANV-KGVAADLSHC 122
Query: 296 NTPAKVSGHKGPEELSAAIK 355
NTP++V GP EL+ +K
Sbjct: 123 NTPSQVLDFTGPSELANCLK 142
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/64 (65%), Positives = 53/64 (82%)
Frame = +1
Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPI 531
+ +DVV+IPAGVPRKPGMTRDDLFN NA IV+ + +I+ P A+V+MI+NPVNSTVPI
Sbjct: 93 EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVNSTVPI 152
Query: 532 DSEV 543
+EV
Sbjct: 153 AAEV 156
Score = 74.9 bits (176), Expect = 4e-14
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = +2
Query: 185 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIK 355
IGQPLALL+K NPLV+ L+LYDIA TPGVAAD+SH+N+PA V G G E+L A++
Sbjct: 38 IGQPLALLMKLNPLVSSLSLYDIAG-TPGVAADVSHINSPALVKGFVGEEQLGEALE 93
>07_03_1371 - 26100553-26101767
Length = 404
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/61 (70%), Positives = 52/61 (85%)
Frame = +1
Query: 361 DVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPIDSE 540
DVVVIPAGVPRKPGMTRDDLF NA IVR++ ++A +AP A+V +I+NPVNSTVPI +E
Sbjct: 147 DVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADHAPAALVHVISNPVNSTVPIAAE 206
Query: 541 V 543
V
Sbjct: 207 V 207
Score = 69.7 bits (163), Expect = 1e-12
Identities = 35/56 (62%), Positives = 42/56 (75%)
Frame = +2
Query: 185 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAI 352
IGQPL+LL+K +PLV+ L LYDIA V GV ADL H NTPAKV+G G EEL+ +
Sbjct: 89 IGQPLSLLVKMSPLVSALHLYDIANVD-GVTADLGHCNTPAKVAGFTGKEELAGCL 143
>01_06_1220 + 35493575-35494765
Length = 396
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +1
Query: 361 DVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPIDSE 540
DVVVIPAGVPRKPGMTRDDLFN NA IV+ + ++A N P+A + +I+NPVNSTVPI +E
Sbjct: 145 DVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPEAFIHIISNPVNSTVPIAAE 204
Query: 541 V 543
V
Sbjct: 205 V 205
Score = 69.7 bits (163), Expect = 1e-12
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = +2
Query: 83 ALKPAALAVQNGAKNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPV 262
++ P + N + S + ++K IGQPL LL+K +PLV+ L LYDIA V
Sbjct: 55 SISPRIVPKANSGSHISP--EASYKVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIANV 112
Query: 263 TPGVAADLSHMNTPAKVSGHKGPEELSAAIK 355
GVAADLSH NTP++V GP EL+ +K
Sbjct: 113 -KGVAADLSHCNTPSQVLDFTGPSELANCLK 142
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 91.1 bits (216), Expect = 5e-19
Identities = 43/61 (70%), Positives = 50/61 (81%)
Frame = +1
Query: 361 DVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPIDSE 540
D+V+IPAGVPRKPGMTRDDLFN NA IVR + IA P AIV++I+NPVNSTVPI +E
Sbjct: 127 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAE 186
Query: 541 V 543
V
Sbjct: 187 V 187
Score = 67.3 bits (157), Expect = 7e-12
Identities = 36/67 (53%), Positives = 42/67 (62%)
Frame = +2
Query: 152 FKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGP 331
FK IGQPLALL+K NPLV+ L LYD+ TPGV AD+SHMNT A V G G
Sbjct: 58 FKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVN-TPGVTADISHMNTGAVVRGFLGQ 116
Query: 332 EELSAAI 352
+L A+
Sbjct: 117 PQLENAL 123
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 90.2 bits (214), Expect = 9e-19
Identities = 41/61 (67%), Positives = 50/61 (81%)
Frame = +1
Query: 361 DVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPIDSE 540
D+V+IPAG+PRKPGMTRDDLFN NA IVR + +A P AIV++I+NPVNSTVPI +E
Sbjct: 112 DLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAKCCPNAIVNLISNPVNSTVPIAAE 171
Query: 541 V 543
V
Sbjct: 172 V 172
Score = 69.3 bits (162), Expect = 2e-12
Identities = 36/67 (53%), Positives = 44/67 (65%)
Frame = +2
Query: 152 FKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGP 331
FK IGQPL+LL+K NPLV+ L LYD+ TPGV AD+SHM+T A V G GP
Sbjct: 43 FKVAVLGAAGGIGQPLSLLMKLNPLVSVLHLYDVVN-TPGVTADVSHMDTTAVVRGFLGP 101
Query: 332 EELSAAI 352
+L AA+
Sbjct: 102 NQLEAAL 108
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/53 (30%), Positives = 35/53 (66%)
Frame = +1
Query: 358 ADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVN 516
+D+ ++ AG + PG +R +L N + R I ++A ++P+A++ +++NPV+
Sbjct: 108 SDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNPVD 160
>04_04_0587 + 26410808-26411338
Length = 176
Score = 30.7 bits (66), Expect = 0.79
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 251 CRIKPAWSPEDSASVEGPKAGRYHRRHQRP 162
CR KPA SP A++ P GR RR +RP
Sbjct: 3 CRAKPASSPPSRAALAAP--GRCRRRRRRP 30
>05_04_0057 + 17543016-17543312
Length = 98
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 90 NLPPLLYKMVQRTFPPHHRGTLKWWSLVP 176
++P L+ V R PP RG +WW L P
Sbjct: 39 SVPSLVEVEVDRCGPPGRRGGRRWWLLCP 67
>04_01_0527 - 6913266-6913802
Length = 178
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = -1
Query: 347 LLIAPQVPCGR*PWLGCSCGKG---RLRRRGSQALCRIKPA--WSPEDSASVEGPKAGRY 183
++ P++ C + + S G R RRR + CR P SPE S +
Sbjct: 75 VIAEPRLLCAKADTIAVSARLGHPVRRRRRAHRRQCRPSPPPPLSPEPSTAAVAEPPAAA 134
Query: 182 HRRHQ 168
HRRHQ
Sbjct: 135 HRRHQ 139
>10_03_0046 + 7357777-7357992
Length = 71
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 GGRWCRRWY-RPAFGPSTEAESSGDQAGF 243
GG RRW+ RPA G STE S + GF
Sbjct: 25 GGDGLRRWWCRPASGRSTERVSGREVGGF 53
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAI-VDMITNPVNSTVP 528
+DA+ ++ PR PGM R L + N I + ++ A + + V ++ NP N+
Sbjct: 148 EDAEWALLIGAKPRGPGMERSALLDINGQIFAEQGKALNSVASRNVKVIVVGNPCNTNAL 207
Query: 529 I 531
I
Sbjct: 208 I 208
>07_03_0730 + 21030123-21030338
Length = 71
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 GGRWCRRWY-RPAFGPSTEAESSGDQAGF 243
GG RRW+ RPA G STE S + GF
Sbjct: 25 GGDGLRRWWCRPASGRSTERVSGREVGGF 53
>01_06_1064 + 34237919-34238155
Length = 78
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 GGRWCRRWY-RPAFGPSTEAESSGDQAGF 243
GG RRW+ RPA G STE S + GF
Sbjct: 25 GGDGLRRWWCRPASGRSTERVSGREVGGF 53
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 390 GYSCWDDYNISILMAADSSSGPLWPLTLAGVFMWERSAATPGVTGAMSYKASL 232
G C N S+L+ + SSSG +WP A W + G YK +
Sbjct: 260 GMICPHLINFSMLLGSISSSGFIWPALQAKQGEWYTDPSPTSFKGINGYKVPM 312
>08_02_1015 - 23597445-23597628,23597654-23597877
Length = 135
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 236 AWSPEDSASVEGPKAGRYHRRHQRPPL*SSSVMW 135
AW+ ED+A + + G + RPP SS V W
Sbjct: 2 AWTVEDAAISDELRRGAWMTERTRPPPLSSDVAW 35
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 268 RRRSRPFP-HEHPSQ-GQRPQGT*GAISSHQDADV 366
+RR P P HE+PSQ GQ G G SH DA+V
Sbjct: 603 KRRGLPMPPHEYPSQHGQGRHGD-GVGFSHSDANV 636
>04_03_0781 +
19572795-19573540,19573906-19573956,19574179-19574251,
19574772-19574876
Length = 324
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/82 (28%), Positives = 33/82 (40%)
Frame = +1
Query: 157 SGGRWCRRWYRPAFGPSTEAESSGDQAGFIRHSACDPRRRSRPFPHEHPSQGQRPQGT*G 336
+GG R W R A GP++ S+G + P P P+ P+
Sbjct: 84 NGGGGTRDWLRLATGPASPGASAGSDHDLFPSTTTTAPAPQPPTPTPTPTPTPTPR---- 139
Query: 337 AISSHQDADVVVIPAGVPRKPG 402
H DV+V+P G+P PG
Sbjct: 140 ----HHHHDVLVLP-GMP-PPG 155
>02_02_0442 - 10318576-10319109
Length = 177
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = -1
Query: 347 LLIAPQVPCGR*PWLGCSCGKG---RLRRRGSQALCRIKP--AWSPEDSASVEGPKAGRY 183
++ P++ C + + S G R RRR + R P + SPE S + G
Sbjct: 74 VIAEPRLLCAKADTIAASARLGHPVRRRRRAHRRRRRPSPPPSLSPEPSTAAVGEPPAAA 133
Query: 182 HRRHQ 168
HRRHQ
Sbjct: 134 HRRHQ 138
>01_04_0063 -
15574855-15575143,15575398-15575602,15575746-15575947,
15576038-15576613,15576623-15576786,15576826-15576928,
15577259-15577847,15578056-15578372
Length = 814
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 313 QRPQGT*GAISSHQDADVVVIPAGVP-----RKPGMTRDDLFNTNAXIVRDIALSIAXNA 477
+RPQGT A+ SH ++ + + VP R PG + N A +R I+ A
Sbjct: 286 KRPQGTVKALDSHVMCELAQLASLVPANETGRIPGQPDSSIENVKAITMRGGTSGISKEA 345
Query: 478 P 480
P
Sbjct: 346 P 346
>01_01_0220 + 1866989-1868393,1868465-1869153
Length = 697
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 350 WLLIAPQVPCGR*PWLGCSCGKGRLRR 270
W L A PCG W G SC GR+ R
Sbjct: 61 WDLAANPAPCGT--WRGVSCAGGRVTR 85
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 220 SSGDQAGFIRHSACDPRRRSRPFPHEHPSQGQR 318
+S D A F HS+C R P P QGQR
Sbjct: 985 ASPDAAAFAVHSSCSRALRMGPKPFAGTPQGQR 1017
>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
Length = 275
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 248 RIKPAWSPEDSASVEGPKAGRYHRRHQR 165
R+ PAW+PE+ A +E G Y RH R
Sbjct: 109 RLSPAWTPEEDACLERLARG-YGFRHWR 135
>05_03_0362 -
12973488-12974251,12975346-12975580,12976410-12976738,
12977277-12977404,12977695-12977879,12977972-12978165,
12978239-12978368,12978507-12978566,12979037-12979059,
12979158-12979218,12979677-12979748,12979804-12979924,
12980351-12980415,12980973-12981089,12981970-12982239
Length = 917
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 340 ISSHQDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNS 519
+ HQ D+ V+PA + P + D+ +A + L N P + D +T V +
Sbjct: 777 VEEHQQIDLAVVPAAIQDVPTSGKTDIEMADAATTETVNLKATDN-PSSSNDGLTQ-VRT 834
Query: 520 TVP 528
+P
Sbjct: 835 LLP 837
>11_01_0719 - 5924088-5924362,5924458-5924605
Length = 140
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 236 LALYDIAPVTPGVAADLSHMNTPAKVSG 319
L L +AP+ PG D H + PA +G
Sbjct: 8 LVLVLLAPLLPGTTGDQQHAHLPAAAAG 35
>05_06_0098 + 25560158-25560925
Length = 255
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 218 NPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAI 352
+P V ++PVTP VA + +PA S PEE +AAI
Sbjct: 163 SPSVLDFPSLALSPVTPLVADPFNR--SPASASSSASPEEEAAAI 205
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 253 SACDPRRRSRPFPHEHPSQGQRPQGT*GAISSHQDADVVVIPAGVPRKP 399
+ C P S P P S RP G+ GA +S PA P KP
Sbjct: 3 NCCPPGSSSEPDPPPASSGSSRPAGSAGAAASPATISPSAAPA--PAKP 49
>02_01_0530 - 3853274-3853666
Length = 130
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 299 CSCGKGRL--RRRGSQALCRIKPA 234
C CG GRL R R ALC +PA
Sbjct: 26 CGCGLGRLVRRLRRQAALCAARPA 49
>01_03_0142 + 13031297-13031568,13031724-13031952,13032608-13032715
Length = 202
Score = 27.1 bits (57), Expect = 9.8
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Frame = +1
Query: 79 PRPKTCRPCCTKWCKELFHHITEEL*SGGRWCRRWYRPAFGPST-EAESSGDQAGFIRHS 255
P P+ R C + + I +L GG C R A G ST S QA ++
Sbjct: 55 PLPRYSRLCLVQARATFYLPIFSDLGQGGWLCHPLQRFASGESTRNLASVNSQAWWLERE 114
Query: 256 ACDPRRRSRPFPHEHPSQGQRPQGT*GA--ISSHQDADVVVIPAGVPRKPGMTRDDLFNT 429
+ + F + S G +P G+ + H D P GV ++ T L
Sbjct: 115 GKEVAKGRSEFGED--SNGGKPATIEGSSIAAFHSDNSDGCDPRGVGQRQHSTAQSLLPG 172
Query: 430 NAXIV 444
++ I+
Sbjct: 173 DSSII 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,782,245
Number of Sequences: 37544
Number of extensions: 384464
Number of successful extensions: 1214
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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