Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0341
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   105   3e-23
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    34   0.058
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  105 bits (251), Expect = 3e-23
 Identities = 49/64 (76%), Positives = 57/64 (89%)
 Frame = +1

Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPI 531
           ++ADV+VIPAGVPRKPGMTRDDLFNTNA IVRD+A  IA  +PKA++ +ITNPVNSTVPI
Sbjct: 95  ENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPI 154

Query: 532 DSEV 543
            SEV
Sbjct: 155 ASEV 158



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = +2

Query: 185 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIK 355
           IGQPL LLLKQ+PLV  LALYD+   TPGVAADLSH+++ AKV+ H GP+EL AA++
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVE 95


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 34.3 bits (75), Expect = 0.058
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 114 FCTARAAGFRARENIFVVC-LTCIYVYI*TIST*PSRP 4
           FC+ R   F  R  +F+ C LTC+Y  +  IST P+ P
Sbjct: 320 FCSKRIKNFGMRPTMFIGCFLTCLYCALVVISTPPTAP 357


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 335 PQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 198
           P V C     +GCSC KG LR R  Q    + P   P   ++ E P
Sbjct: 187 PLVNCMEKCDIGCSCKKGFLRNRQGQC---VNPTECPATGSTDENP 229


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 152 SSSVMWWKSSLHHFVQQGRQV 90
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 338 APQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 198
           APQV C     +GCSC  G +  R +Q +C +K A  P   ++ E P
Sbjct: 122 APQVNCLMACQVGCSCMDGFV--RNNQGVC-VKEAECPAIGSTDENP 165


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 168 LVPPVVSASLWPFY*SRILW*PGWLYT 248
           + P ++   +WP+    + W  GWLY+
Sbjct: 265 IAPTLLVPLIWPYLKIEVSWQTGWLYS 291


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 168 LVPPVVSASLWPFY*SRILW*PGWLYT 248
           L+ PVV AS + F+ S+  W  GWLY+
Sbjct: 265 LLCPVV-ASFFHFFFSKFSWQTGWLYS 290


>AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical
           protein Y116A8C.1 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 147 LCDVVEKFFAPFCTARAAG 91
           +C  +  FF PFC  RAAG
Sbjct: 164 VCISIRTFFGPFCQNRAAG 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,268
Number of Sequences: 27780
Number of extensions: 282922
Number of successful extensions: 673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)