Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0341
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 299 CSCGKGRLRRRGSQALCRIKPA 234
           C+C  GR+RRR   A  R KP+
Sbjct: 406 CACCPGRVRRRYQPAF-RCKPS 426


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +1

Query: 211 EAESSGDQAGFIRHSACDPRRRSRPFPHE 297
           E    G   G+     CD R++  P P +
Sbjct: 154 ELSQPGSLNGYGSSDGCDARKKKGPTPRQ 182


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 199 GPSTEAE-SSGDQAGFIRHSACDPRRRSRPFPHEHPSQGQR 318
           GP++    ++G  +  +  S     +   P+P  HP  G +
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSK 107


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 199 GPSTEAE-SSGDQAGFIRHSACDPRRRSRPFPHEHPSQGQR 318
           GP++    ++G  +  +  S     +   P+P  HP  G +
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,789
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)