Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0341
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15020.1 68416.m01900 malate dehydrogenase [NAD], mitochondri...    97   9e-21
At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal, puta...    94   6e-20
At1g53240.1 68414.m06033 malate dehydrogenase [NAD], mitochondri...    94   6e-20
At3g47520.1 68416.m05168 malate dehydrogenase [NAD], chloroplast...    93   1e-19
At5g09660.1 68418.m01117 malate dehydrogenase, glyoxysomal ident...    87   7e-18
At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative stron...    38   0.006
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   2.0  
At2g36960.2 68415.m04533 myb family transcription factor contain...    28   3.5  
At2g36960.1 68415.m04532 myb family transcription factor contain...    28   3.5  
At1g51540.1 68414.m05801 kelch repeat-containing protein contain...    27   6.2  
At1g14170.1 68414.m01675 KH domain-containing protein location o...    27   8.2  

>At3g15020.1 68416.m01900 malate dehydrogenase [NAD], mitochondrial,
           putative similar to mitochondrial NAD-dependent malate
           dehydrogenase GB:CAA10320 SP|Q9ZP06 [Arabidopsis
           thaliana]; contains InterPro entry IPR001236:
           Lactate/malate dehydrogenase
          Length = 341

 Score = 96.7 bits (230), Expect = 9e-21
 Identities = 42/64 (65%), Positives = 57/64 (89%)
 Frame = +1

Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPI 531
           + AD+V+IPAGVPRKPGMTRDDLFN NA IV++++++IA   P+A+V+MI+NPVNSTVPI
Sbjct: 96  EGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPI 155

Query: 532 DSEV 543
            +E+
Sbjct: 156 AAEI 159



 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
 Frame = +2

Query: 71  MFSRALKPAALAVQNGA--KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLAL 244
           MF   +  +A  V+ G   + F++ S  + K         IGQPL+LL+K NPLV+ L+L
Sbjct: 1   MFRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSL 60

Query: 245 YDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIK 355
           YDIA  TPGVAAD+ H+NT ++VSG+ G ++L  A++
Sbjct: 61  YDIAN-TPGVAADVGHINTRSQVSGYMGDDDLGKALE 96


>At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal,
           putative strong similarity to glyoxysomal malate
           dehydrogenase (EC 1.1.1.37) SP|P19446 {Citrullus
           lanatus}, SP|P46488 {Cucumis sativus}, [Medicago sativa]
           GI:2827078, SP|Q42972 {Oryza sativa}, SP|Q9ZP05
           {Arabidopsis thaliana}, SP|P37228 {Glycine max};
           contains InterPro entry IPR001236: Lactate/malate
           dehydrogenase
          Length = 354

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 44/61 (72%), Positives = 53/61 (86%)
 Frame = +1

Query: 361 DVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPIDSE 540
           D+V+IPAGVPRKPGMTRDDLFN NA IVR ++ +IA   PKAIV++I+NPVNSTVPI +E
Sbjct: 112 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAE 171

Query: 541 V 543
           V
Sbjct: 172 V 172



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 34/67 (50%), Positives = 42/67 (62%)
 Frame = +2

Query: 152 FKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGP 331
           FK         IGQPLA+L+K NPLV+ L LYD+A   PGV AD+SHM+T A V G  G 
Sbjct: 43  FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVAN-APGVTADISHMDTSAVVRGFLGQ 101

Query: 332 EELSAAI 352
            +L  A+
Sbjct: 102 PQLEEAL 108


>At1g53240.1 68414.m06033 malate dehydrogenase [NAD], mitochondrial
           identical to mitochondrial NAD-dependent malate
           dehydrogenase GI:3929649 SP|Q9ZP06 from [Arabidopsis
           thaliana]; contains InterPro entry IPR001236:
           Lactate/malate dehydrogenase
          Length = 341

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 41/64 (64%), Positives = 54/64 (84%)
 Frame = +1

Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPI 531
           + AD+V+IPAGVPRKPGMTRDDLFN NA IV+++  +IA   P A+++MI+NPVNSTVPI
Sbjct: 96  EGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVNSTVPI 155

Query: 532 DSEV 543
            +E+
Sbjct: 156 AAEI 159



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 38/78 (48%), Positives = 53/78 (67%)
 Frame = +2

Query: 122 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNT 301
           ++FS+ S    K         IGQPLALL+K NPLV+ L+LYDIA  TPGVAAD+ H+NT
Sbjct: 20  RSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAN-TPGVAADVGHINT 78

Query: 302 PAKVSGHKGPEELSAAIK 355
            ++V G+ G + L+ A++
Sbjct: 79  RSEVVGYMGDDNLAKALE 96


>At3g47520.1 68416.m05168 malate dehydrogenase [NAD], chloroplast
           (MDH) identical to chloroplast NAD-malate dehydrogenase
           [Arabidopsis thaliana] GI:3256066; contains InterPro
           entry IPR001236: Lactate/malate dehydrogenase; contains
           Pfam profiles PF00056: lactate/malate dehydrogenase, NAD
           binding domain  and PF02866: lactate/malate
           dehydrogenase, alpha/beta C-terminal domain
          Length = 403

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 42/64 (65%), Positives = 52/64 (81%)
 Frame = +1

Query: 352 QDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPI 531
           +D +VVVIPAGVPRKPGMTRDDLFN NA IV+ +  ++A N P A + +I+NPVNSTVPI
Sbjct: 149 KDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPVNSTVPI 208

Query: 532 DSEV 543
            +EV
Sbjct: 209 AAEV 212



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 35/57 (61%), Positives = 43/57 (75%)
 Frame = +2

Query: 185 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIK 355
           IGQPL+LL+K +PLV+ L LYDIA V  GVAADLSH NTP++V    GP EL+  +K
Sbjct: 94  IGQPLSLLIKMSPLVSTLHLYDIANV-KGVAADLSHCNTPSQVRDFTGPSELADCLK 149


>At5g09660.1 68418.m01117 malate dehydrogenase, glyoxysomal
           identical to SP|Q9ZP05; identical to cDNA microbody
           NAD-dependent malate dehydrogenase GI:3929650
          Length = 354

 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +1

Query: 361 DVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVNSTVPIDSE 540
           D+V+IPAG+PRKPGMTRDDLF  NA IV+ +   +A   P AIV++I+NPVNSTVPI +E
Sbjct: 112 DLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAE 171

Query: 541 V 543
           V
Sbjct: 172 V 172



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 32/67 (47%), Positives = 41/67 (61%)
 Frame = +2

Query: 152 FKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGP 331
           FK         IGQ L+LL+K NPLV+ L LYD+    PGV AD+SHM+T A V G  G 
Sbjct: 43  FKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVN-APGVTADVSHMDTGAVVRGFLGA 101

Query: 332 EELSAAI 352
           ++L  A+
Sbjct: 102 KQLEDAL 108


>At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative strong
           similarity to L-lactate dehydrogenase from Lycopersicon
           esculentum (GI:1620970, GI:1620972), Hordeum vulgare
           (SP|P22988, SP|P22989); contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 353

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 16/53 (30%), Positives = 32/53 (60%)
 Frame = +1

Query: 358 ADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIAXNAPKAIVDMITNPVN 516
           +D+ ++ AG  + PG +R +L   N  + R I   +A  +P +I+ +++NPV+
Sbjct: 109 SDLCIVTAGARQNPGESRLNLLQRNVALFRHIIPPLAKASPDSILIIVSNPVD 161


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/83 (22%), Positives = 32/83 (38%)
 Frame = +1

Query: 289 PHEHPSQGQRPQGT*GAISSHQDADVVVIPAGVPRKPGMTRDDLFNTNAXIVRDIALSIA 468
           P   P   Q PQ     +S+   A  +  P   P+KP      + +T + +      +  
Sbjct: 494 PITPPDAFQSPQ-----VSTPSSAVPITEPVSEPKKPEAQSSSILSTQSTVDSVANATKT 548

Query: 469 XNAPKAIVDMITNPVNSTVPIDS 537
            N P  +   I+NP  +  P+ S
Sbjct: 549 QNEPLPVKSEISNPGTTVTPVSS 571


>At2g36960.2 68415.m04533 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 741

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 202 PSTEAE-SSGDQAGFIRHSACDPRRRSRPFPHEHPSQGQRPQG 327
           PS   E SSGD+  +  H   DP       PH   S G+ P G
Sbjct: 635 PSQLVEASSGDEGSYNPHDDGDPMEEGPADPHTMDSPGKTPCG 677


>At2g36960.1 68415.m04532 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 743

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 202 PSTEAE-SSGDQAGFIRHSACDPRRRSRPFPHEHPSQGQRPQG 327
           PS   E SSGD+  +  H   DP       PH   S G+ P G
Sbjct: 637 PSQLVEASSGDEGSYNPHDDGDPMEEGPADPHTMDSPGKTPCG 679


>At1g51540.1 68414.m05801 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 1036

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 417 VITGHSRFTGYSCWDDYNISI 355
           ++T HS FT    WD YN S+
Sbjct: 314 LVTDHSSFTEKEAWDGYNKSL 334


>At1g14170.1 68414.m01675 KH domain-containing protein location of
           EST 219C14T7 , gb|N38506
          Length = 454

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 203 LLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKMLML*SSQQ 382
           LL+   PLV R ALY +A +     +   H+   +  S    P    A +    L SS +
Sbjct: 174 LLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQP---GAMLMSAALTSSHR 230

Query: 383 EYPVNRE 403
            Y V R+
Sbjct: 231 NYAVRRD 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,110
Number of Sequences: 28952
Number of extensions: 270953
Number of successful extensions: 652
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)