Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0339
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 28 0.57
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 3.0
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 4.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 4.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 4.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 4.0
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 7.0
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 7.0
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 24 9.3
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 24 9.3
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 24 9.3
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 24 9.3
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 24 9.3
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 9.3
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.9 bits (59), Expect = 0.57
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 151 PPHTEMA-VALRGPGPLHQ*GQIVWMELSLVFLGWIHLV 38
PPH + + LR GP+ + VW+ FL W+H+V
Sbjct: 596 PPHIKKPEIPLRVSGPIKVEAK-VWLANERTFLKWLHVV 633
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 8 STEGVERFSLYEVYPSQEYERKLHPDDLPLLVQ 106
ST E+ + +EV+ SQ + PD LPL++Q
Sbjct: 464 STFFSEQLTAFEVWLSQGLISRKPPDQLPLVLQ 496
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 362 IKCIDNRFLFPGNMLCLGICIQDCIVCRLILTTV 261
+ I F+ N + LG CI CI+ R+I V
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 362 IKCIDNRFLFPGNMLCLGICIQDCIVCRLILTTV 261
+ I F+ N + LG CI CI+ R+I V
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 362 IKCIDNRFLFPGNMLCLGICIQDCIVCRLILTTV 261
+ I F+ N + LG CI CI+ R+I V
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 362 IKCIDNRFLFPGNMLCLGICIQDCIVCRLILTTV 261
+ I F+ N + LG CI CI+ R+I V
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 367 IRSNV*IIVFCFLAICYAWEFVY 299
IRS +I F ICY W F+Y
Sbjct: 487 IRSYFMVIEPIFKKICYLWLFLY 509
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 24.2 bits (50), Expect = 7.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 172 APRCLRWHPTCRTPRLLPPF-TR*TLPGP 255
A C++ HP+ T LPPF + T+P P
Sbjct: 225 AADCVKGHPSPATVTTLPPFMSMSTIPIP 253
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 273 NQTTNDTVLYTNSQA*HIARKQKTI 347
N +TN VLY +SQ H ++ T+
Sbjct: 143 NSSTNPDVLYMSSQHPHTQQRYSTL 167
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 333 SWQYVMLGNLYTGL 292
SW +M+G L+TGL
Sbjct: 109 SWVQIMVGKLFTGL 122
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.8 bits (49), Expect = 9.3
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +1
Query: 151 EPSRTPSAPRCLRWHPTC---RTPRLLPPFTR*TLPGPLCTVVRIRRQTIQSCIQIPKHN 321
E S PSAP+ R +PT +T R T + I T+ +P++N
Sbjct: 753 EASTYPSAPKNTRTYPTAEVEKTRHDSSQSARQLKARSTATTISISLSTVSDVFTLPRNN 812
Query: 322 I 324
+
Sbjct: 813 L 813
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 380 LTFPYKIKCIDNRFLFPGN 324
L F YKIK +N FL GN
Sbjct: 102 LLFAYKIKYPENFFLLRGN 120
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 23.8 bits (49), Expect = 9.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 101 PIRADRLDGAFARILGMD 48
P+++ L+ A ARI+GMD
Sbjct: 95 PLKSKHLETATARIMGMD 112
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 182 ASVGTPHAAHLASSLPSLDEPS 247
A+ +PHAA ASSLP E S
Sbjct: 177 ANTVSPHAARSASSLPVPKEAS 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,414
Number of Sequences: 5004
Number of extensions: 29873
Number of successful extensions: 104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -