Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0339
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)                  30   0.73 
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          28   2.2  
SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32)                28   2.9  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   27   3.9  
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_25962| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_5462| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_39284| Best HMM Match : WW (HMM E-Value=7.9)                        27   5.2  
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   5.2  
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                27   5.2  
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)                27   6.8  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)                      27   6.8  
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     27   6.8  
SB_28177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  27   6.8  
SB_7759| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.0  
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   26   9.0  
SB_33864| Best HMM Match : WD40 (HMM E-Value=2.1)                      26   9.0  
SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)              26   9.0  

>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
          Length = 500

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 123 SGGQARCTNKGRSSGWSFRSYSWDGYTSYKENRSTP 16
           S G    + +G     S RS +W  + S+K NR++P
Sbjct: 462 SSGSRHTSTRGNKCTGSDRSTNWASHASFKSNRNSP 497


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 PSAPRCLRWHPTCRTPRLLPPFTR*TLPGPL 258
           P   RC+ W+   +TP L     R +LPGP+
Sbjct: 41  PCNGRCIYWYRNSKTPTLDDFLPRNSLPGPV 71


>SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32)
          Length = 355

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 3   TTRPKASSGSPCTRCIHPKNTSESSIQTICPYWCNGPGPLRATAISVC 146
           T RP +   +  T CI   ++  S++ T+C      P P R+T +++C
Sbjct: 24  TIRPSSHRSTLVTLCIVTPSSHRSTLVTLC---IITPSPNRSTLVTLC 68


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 5    DSTEGVERFSLYEVYPSQEYERKLHPDDLPLLVQR 109
            D+ E V+R +L   +P + YE  L   +LP+L +R
Sbjct: 1296 DALENVQRRALKIAFPGRSYEGSLTLANLPMLHKR 1330


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 24  SGSPCTRCIHP-KNTSESSIQTICPYWCNGPGPL 122
           +G   T  ++P  N    +     PYW NGPG L
Sbjct: 375 AGFAVTMWVYPFANVGSEAFHKGMPYWVNGPGGL 408


>SB_25962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 5   DSTEGVERFSLYEVYPSQEYERKLHPDDLPLLVQR 109
           D+ E V+R +L   +P + YE  L   +LP+L +R
Sbjct: 232 DALENVQRRALKIAFPGRSYEGLLTLANLPMLHER 266


>SB_5462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 5   DSTEGVERFSLYEVYPSQEYERKLHPDDLPLLVQR 109
           D+ E V+R +L   +P   YE  L   +LP L +R
Sbjct: 240 DALENVQRRTLKIAFPEHSYEGSLTLANLPTLYER 274


>SB_39284| Best HMM Match : WW (HMM E-Value=7.9)
          Length = 251

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 2   YDSTEGVERFSLYEVYPSQEYERKLHPDDLPLLVQR 109
           +D+ E V+R +L   +P + YE  L   +LP L +R
Sbjct: 153 FDALENVQRRALKIAFPVRSYEGSLTLANLPTLHER 188


>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 406

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 204 PHTSPPPSLHSMNPPGP 254
           PHTS PP+ H+  PP P
Sbjct: 184 PHTSIPPTPHTSIPPTP 200


>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 20/80 (25%), Positives = 29/80 (36%)
 Frame = +3

Query: 24  SGSPCTRCIHPKNTSESSIQTICPYWCNGPGPLRATAISVCGGTXXXXXXXXXXXXXXHM 203
           +G P  R I   NT + + Q I     +   P + TA  V                  H 
Sbjct: 28  AGHPVPRPIISANTFKMASQAIQEAVVHNVPPPQITARPVAPPPNQQQMPFFPRNVRPHT 87

Query: 204 PHTSPPPSLHSMNPPGPSLH 263
               PPP +  ++ PGP+ H
Sbjct: 88  GPLPPPPMMPRVSMPGPTSH 107


>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   DSTEGVERFSLYEVYPSQEYERKLHPDDLPLLVQR 109
           D+ E V+R +L   +P + YE  L   +LP L +R
Sbjct: 517 DALENVQRRALKIAFPGRSYEGSLTLANLPTLHER 551


>SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)
          Length = 605

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 200 HAAHLASSLPSLDEPSRALSALSLESDDKRYSPVYKFPSITYCQ 331
           HA    ++LP +  P   L    LE  D    P+Y +  +T C+
Sbjct: 455 HAKTFVTTLPLVQSPLEELQNCELEIPDGEMCPIY-YNDLTPCE 497


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 26   RFSLYEVYPSQE-YERKLHPDDLPLLVQRAWPPESDCHF 139
            R+ L EV   +    R L   D PLL+Q  WP     HF
Sbjct: 1070 RYYLCEVGMGKRGVSRALEDKDCPLLLQCRWPDPEKYHF 1108


>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
          Length = 138

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 323 MLCLGICIQDCIVCRLI 273
           M C+G C+  C+ CR++
Sbjct: 49  MRCVGCCVMRCVACRVM 65


>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 323 MLCLGICIQDCIVCRLI 273
           M C+G C+  C+ CR++
Sbjct: 129 MRCVGCCVMRCVACRVM 145


>SB_28177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 198 HMPHTSPPPSLHSMNPPGPSLH 263
           H P T  PP++H   P  PS H
Sbjct: 174 HAPPTLQPPTVHITGPTPPSSH 195


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 38  YEVYPSQEYERKLHPDDLPLLVQRAWP 118
           Y+  P Q+Y ++ HP D PL+++R  P
Sbjct: 572 YQQQPQQQYGQQQHPGD-PLVLERPPP 597


>SB_7759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 181 CLRWHPTC--RTPRLLPPFTR*TLPGPLCTVVRIRR 282
           C+RW  T   +  RLL P  R T   PLC V    R
Sbjct: 92  CVRWSKTIQFKQRRLLIPVVRLTAGRPLCPVQAYER 127


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 181  CLRWHPTC--RTPRLLPPFTR*TLPGPLCTVVRIRR 282
            C+RW  T   +  RLL P  R T   PLC V    R
Sbjct: 908  CVRWSKTIQFKQRRLLIPVVRLTAGHPLCPVQAYER 943


>SB_33864| Best HMM Match : WD40 (HMM E-Value=2.1)
          Length = 397

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 5   DSTEGVERFSLYEVYPSQEYERKLHPDDLPLLVQR 109
           D+ E V+R +L   +P   YE  L   +LP L +R
Sbjct: 300 DALENVQRRALKIAFPGSSYEGSLTLANLPTLHER 334


>SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 93  PYWCNGPGPLRATAIS 140
           P+ C GPGP+R  A S
Sbjct: 677 PFVCKGPGPVRGNATS 692


>SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)
          Length = 487

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 173 AEGVREGSAAHGNGSRSQGARP 108
           A+G +E  AA G+   S+GARP
Sbjct: 462 AQGFKEEKAAQGSRDMSRGARP 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,438,391
Number of Sequences: 59808
Number of extensions: 260810
Number of successful extensions: 1020
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)