Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0339
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    29   0.85 
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.       29   0.85 
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ...    29   0.85 
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ...    29   0.85 
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ...    29   0.85 
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ...    29   0.85 
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    29   1.1  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    29   1.1  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   1.5  
U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    27   3.4  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    27   6.0  
U28731-8|AAA68300.2|  113|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    26   7.9  

>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 197 PHAAHLASSLPSLDEPSRALSALSLESDDKRYSPVYKF 310
           P+   L S +PSL+EP + ++ +SL +D K  S    F
Sbjct: 85  PNPNDLTSFIPSLEEPYQKIAPVSLRNDSKTDSSAAGF 122


>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 23  ERFSLYEVYPSQEYERKLHPDDLPLLVQRAW 115
           + +SL+EV+ + E ERKL  ++ PL+VQ  W
Sbjct: 85  DTYSLWEVHENGE-ERKLLDEEKPLVVQLQW 114


>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
           protein W03F11.6e protein.
          Length = 1039

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 23  ERFSLYEVYPSQEYERKLHPDDLPLLVQRAW 115
           + +SL+EV+ + E ERKL  ++ PL+VQ  W
Sbjct: 83  DTYSLWEVHENGE-ERKLLDEEKPLVVQLQW 112


>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
           protein W03F11.6d protein.
          Length = 1184

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 23  ERFSLYEVYPSQEYERKLHPDDLPLLVQRAW 115
           + +SL+EV+ + E ERKL  ++ PL+VQ  W
Sbjct: 83  DTYSLWEVHENGE-ERKLLDEEKPLVVQLQW 112


>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
           protein W03F11.6c protein.
          Length = 1419

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 23  ERFSLYEVYPSQEYERKLHPDDLPLLVQRAW 115
           + +SL+EV+ + E ERKL  ++ PL+VQ  W
Sbjct: 83  DTYSLWEVHENGE-ERKLLDEEKPLVVQLQW 112


>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
           protein W03F11.6a protein.
          Length = 1658

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 23  ERFSLYEVYPSQEYERKLHPDDLPLLVQRAW 115
           + +SL+EV+ + E ERKL  ++ PL+VQ  W
Sbjct: 83  DTYSLWEVHENGE-ERKLLDEEKPLVVQLQW 112


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 142 CAAEPSRTPSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCTVVRIRRQTIQS-CIQ 306
           C + P+ +   P C +   +  TP   PP T  T P P+     + +Q  QS C+Q
Sbjct: 92  CQSAPAVSQCQPMCQQQCQSQCTPMYNPPATTTTTPAPVVQCQPMCQQQCQSTCVQ 147


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 142 CAAEPSRTPSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCTVVRIRRQTIQS-CIQ 306
           C + P+ +   P C +   +  TP   PP T  T P P+     + +Q  QS C+Q
Sbjct: 92  CQSAPAVSQCQPMCQQQCQSQCTPMYNPPATTTTTPAPVVQCQPMCQQQCQSTCVQ 147


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 133 PFPCAAEPSRTPSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCTVV 270
           P+ CAA P   P AP+ +  H     P  +P   R  +P P+ T V
Sbjct: 135 PYACAAPPCPAPVAPQPVIQHVPVPVPVQVPVPIRVPVPVPVPTPV 180


>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 182 ASVGTPHAAHLASSLPSLDEPSRALS 259
           A V   HA  LA  LP+ D+P+R LS
Sbjct: 258 AEVARNHAEELAPHLPTSDDPARELS 283


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 166 PSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCTVVRIRRQTIQSCIQ 306
           PSAP C +    C++P + P      L   +    + + Q  QSC Q
Sbjct: 259 PSAPACQQCQSACQSPVVAPQVVNVMLDVSVAQSAQCQPQCQQSCQQ 305



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 166 PSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCTVVRIRRQTIQSCIQ 306
           PSAP+C +    C+ P + P      L   +    +   Q  QSC Q
Sbjct: 466 PSAPQCQQCQSACQFPVVAPQVVAVILEASVSQSAQCEPQCQQSCQQ 512


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 210 TSPPPSLHSMNPPGPSLHCR*NQTTNDTVL 299
           T+PP ++ +  PP  + +C+ N  T D VL
Sbjct: 144 TNPPTTVTTAAPPVVARYCKSNPITRDIVL 173


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 210 TSPPPSLHSMNPPGPSLHCR*NQTTNDTVL 299
           T+PP ++ +  PP  + +C+ N  T D VL
Sbjct: 157 TNPPTTVTTAAPPVVARYCKSNPITRDIVL 186


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 142 CAAEPSRTPSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCTVVRIRRQTIQS-CIQ 306
           C A PS     P+C +   +   P   PP T  T P P+     + +Q  QS C+Q
Sbjct: 93  CQAAPSVAQCQPQCQQQCQSQCAPMYNPPAT--TTPAPVVQCQPMCQQQCQSTCVQ 146


>U28731-8|AAA68300.2|  113|Caenorhabditis elegans Hypothetical
           protein F12A10.7 protein.
          Length = 113

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 99  NKGRSSGWSFRSYSWDGYTSY 37
           N G SS  S+ SYS  GY+SY
Sbjct: 88  NYGSSSWGSYSSYSSGGYSSY 108


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 166 PSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCTVVRIRRQTIQSCIQ 306
           P+AP+C +    C++P + P      L   +    +   +  QSC Q
Sbjct: 453 PAAPQCQQCQSACQSPVVAPQIVTVILEASVSQSAQCEPECQQSCQQ 499


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,971,632
Number of Sequences: 27780
Number of extensions: 189180
Number of successful extensions: 778
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)