Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0339
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   2.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   3.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 HIARKQKTIIYTFDLIRKC 377
           +I  ++KT+ YT +LI  C
Sbjct: 233 NITMRRKTLFYTVNLIIPC 251


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 HIARKQKTIIYTFDLIRKC 377
           +I  ++KT+ YT +LI  C
Sbjct: 242 NITMRRKTLFYTVNLIIPC 260


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 HIARKQKTIIYTFDLIRKC 377
           +I  ++KT+ YT +LI  C
Sbjct: 229 NITLRRKTLFYTVNLIIPC 247


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 8   STEGVERFSLYEVYPSQ 58
           +TE    +SLYE++P++
Sbjct: 353 ATEASYDYSLYEIFPAR 369


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 HIARKQKTIIYTFDLIRKC 377
           +I  ++KT+ YT +LI  C
Sbjct: 228 NITLRRKTLFYTVNLIVPC 246


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 HIARKQKTIIYTFDLIRKC 377
           +I  ++KT+ YT ++I  C
Sbjct: 237 NITMRRKTLFYTVNIIIPC 255


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 HIARKQKTIIYTFDLIRKC 377
           +I  ++KT+ YT ++I  C
Sbjct: 237 NITMRRKTLFYTVNIIIPC 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,899
Number of Sequences: 438
Number of extensions: 2467
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)