Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0339
(382 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica... 29 0.79
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 28 1.8
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 28 2.4
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 3.2
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 27 3.2
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 5.6
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 26 7.4
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 26 7.4
At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ b... 26 7.4
At3g24540.1 68416.m03082 protein kinase family protein contains ... 26 7.4
At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family... 26 7.4
At5g62720.1 68418.m07872 integral membrane HPP family protein co... 26 9.7
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 26 9.7
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 26 9.7
At3g21890.1 68416.m02760 zinc finger (B-box type) family protein... 26 9.7
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 26 9.7
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 26 9.7
>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
(5320), 1865-1868 (1997))
Length = 933
Score = 29.5 bits (63), Expect = 0.79
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 5 DSTEGVE--RFSLYEVYPSQEYERKLHPDDLPLLVQRAWPP 121
+ST G R SL+E+ P + ++P PL ++R WPP
Sbjct: 341 ESTAGERQPRVSLWEIEPLTTFP--MYPSPFPLRLKRPWPP 379
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 28.3 bits (60), Expect = 1.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 216 PPPSLHSMNPPGPSLH 263
PPPS+H +PP P +H
Sbjct: 447 PPPSIHYSSPPPPPVH 462
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 76 PSRRSALIGATGLAP*ERLPFPCAAEPSRTPSAPRCLRWHPTCRTPRLLP 225
PSR + P +P P A P TP PR + PT PR +P
Sbjct: 97 PSRTPEAPRSVPACPIPEIPRPVPARP--TPETPRPVTARPTPEIPRPVP 144
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 139 PCAAEPSRTPSAPRCLRWHPTCRTPRLLPPFTR*TLPGPL 258
P PSRTP APR + P PR +P P P+
Sbjct: 92 PKRVPPSRTPEAPRSVPACPIPEIPRPVPARPTPETPRPV 131
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 204 PHTSPPPSLHSMNPPGPSLH 263
P SPPP ++S PP P +H
Sbjct: 522 PVNSPPPPVYSPPPPPPPVH 541
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 207 HTSPPPSLHSMNPPGPSLH 263
H+ PPP ++S PP P +H
Sbjct: 548 HSPPPPPVYSPPPPPPPVH 566
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 204 PHTSPPPSLHSMNPPGP 254
P SPPP +HS PP P
Sbjct: 585 PVHSPPPPVHSPPPPAP 601
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 204 PHTSPPPSLHSMNPPGP 254
P SPPP +HS PP P
Sbjct: 601 PVHSPPPPVHSPPPPPP 617
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 49 SIPRIRAKAPSRRSALIGATGLAP*ERLPFPCAAEPSRTPSAPRCLR 189
S+P I L+ + + E PFP EPS A RCL+
Sbjct: 756 SLPEIMKVPVDGVILLMKSMNIPKVENFPFPTPPEPSAIREAERCLK 802
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 204 PHTSPPPSLHSMNPPGP 254
P SPPP +HS PP P
Sbjct: 791 PVHSPPPPVHSPPPPSP 807
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 26.2 bits (55), Expect = 7.4
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 118 P*ERLPFPCAAEPSRTPSAPRCLRWHPTCRTPRLLPPFTR*TLPGPLCT 264
P + LP P + + P P P TP L PP T P PL T
Sbjct: 89 PPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLAT 137
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 26.2 bits (55), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 216 PPPSLHSMNPPGPSLH 263
PPP +H +PP P +H
Sbjct: 663 PPPPVHYSSPPPPEVH 678
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 207 HTSPPPSLHSMNPPGPSLH 263
H SPPP + +PP P +H
Sbjct: 711 HHSPPPPMVHHSPPPPVIH 729
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 201 MPHTSPPPSLHSMNPPGPS 257
M H SPPP + +PP PS
Sbjct: 718 MVHHSPPPPVIHQSPPPPS 736
>At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ
boundaries domain protein 29 (LBD29) identical to
SP|Q9M2J7 LOB domain protein 29 {Arabidopsis thaliana};
supported by full-length cDNA gi:17227167
Length = 218
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 6 TRPKASSGSPCTRCIHPKNTSESSIQTICPYWCNGPGPLRATAI 137
T +SSGSPC C + PY+C+ G AI
Sbjct: 2 TSSSSSSGSPCGACKFLRRKCAKGC-VFAPYFCHEQGASHFAAI 44
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 204 PHTSPPPSLHSMNPPGPS 257
P TS PP L + NPP P+
Sbjct: 78 PSTSTPPRLGNRNPPPPA 95
>At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 135
Score = 26.2 bits (55), Expect = 7.4
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 81 QTICPYWCNGPGPLRATAISVCGGTXXXXXXXXXXXXXXHMPHTSPPPSLHSMNPPG 251
QT CPY CN P P+ T + G ++P+ P P + NP G
Sbjct: 27 QTPCPYPCN-PLPIAGTGSTQPAGYYPQPTGYYPPPSSSNVPN-YPSPPYYGGNPSG 81
>At5g62720.1 68418.m07872 integral membrane HPP family protein
contains Pfam domain, PF04982: HPP family
Length = 243
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 338 LFPGNMLCLGICIQDCIVCRL 276
LFPG C+ +C+ IVC L
Sbjct: 217 LFPGAAACVILCLLQSIVCYL 237
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
family protein / pentatricopeptide (PPR)
repeat-containing protein contains Pfam domains PF01535:
PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1208
Score = 25.8 bits (54), Expect = 9.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 48 IHPKNTSESSIQTICPYWC 104
I+P++ ++ T CP WC
Sbjct: 912 INPRDCTQGLCSTFCPQWC 930
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 68 RKLHPDDLPLLVQRAWPPESD 130
R+LH DL LL R PP+ D
Sbjct: 724 RELHRKDLDLLAGRGLPPDRD 744
>At3g21890.1 68416.m02760 zinc finger (B-box type) family protein
contains Pfam profile: PF01760 CONSTANS family zinc
finger
Length = 121
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 158 EGSAAHGNGSRSQGARPVAPIRADRLDG 75
E + G G RS RP P+R + DG
Sbjct: 9 ESRRSDGGGCRSLCTRPSVPVRCELCDG 36
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 25.8 bits (54), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 198 HMPHTSPPPSLHSMNPPGP 254
H+ H PPP + ++PP P
Sbjct: 19 HLHHYPPPPPYYYLDPPPP 37
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 127 RLPFPCAAEPSRTPSAPRCLRWHPTCR 207
+L CAA S + S PRC + +P+ R
Sbjct: 52 KLQLHCAASSSSSVSPPRCSKPNPSSR 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,438,443
Number of Sequences: 28952
Number of extensions: 175695
Number of successful extensions: 1117
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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