Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0334
(450 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 89 2e-18
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 78 2e-15
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 75 3e-14
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 64 3e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 62 2e-10
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 58 3e-09
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 4e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 4e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 4e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 4e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 4e-07
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 49 2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 2e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 2e-06
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 44 5e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.002
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.002
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 38 0.002
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.002
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.002
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.003
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.005
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.017
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.022
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.029
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.089
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.12
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.21
At3g31950.1 68416.m04046 hypothetical protein 31 0.36
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.36
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.48
At5g47430.1 68418.m05844 expressed protein 30 0.63
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 30 0.63
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 0.63
At4g17410.1 68417.m02607 expressed protein 30 0.63
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 30 0.63
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 0.63
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 0.63
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 30 0.83
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 0.83
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 1.1
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 1.1
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 1.5
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 1.5
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 1.5
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 1.9
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 1.9
At4g06479.1 68417.m00885 hypothetical protein 29 1.9
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 2.5
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 3.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 28 3.4
At4g06526.1 68417.m00938 hypothetical protein 28 3.4
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 28 3.4
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 4.4
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 27 5.9
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 5.9
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 5.9
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 5.9
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 5.9
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 27 5.9
At2g30470.1 68415.m03711 transcriptional factor B3 family protei... 27 7.7
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 27 7.7
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 27 7.7
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC--KEEADR-CYRCN 328
CY C GHFAR+CTQ C+ C GH ARDC K + R CY+C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 329 GTGHIARECAQ-----SPDEPSCYNCNKTGHIARNC 421
G+GH+AR+C Q ++ +CY C K GH AR C
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 86.2 bits (204), Expect = 9e-18
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 16/108 (14%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDS--GFNRQREKCFKCNRTGHFARDCKEE--------- 304
CY C GH AR+CTQ V + D + C+ C GHFARDC ++
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 305 ---ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGG 433
+ CY C G GHIAR+CA + +PS CY C +GH+AR+C + G
Sbjct: 226 GGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRG 272
Score = 77.0 bits (181), Expect = 6e-15
Identities = 39/112 (34%), Positives = 50/112 (44%), Gaps = 24/112 (21%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 307
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 308 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNC 421
D CY C GH AR+C Q +CY+C GHIAR+C
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 245
Score = 74.9 bits (176), Expect = 2e-14
Identities = 40/116 (34%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Frame = +2
Query: 152 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 295
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 296 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE 427
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQ 215
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 307
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 43.2 bits (97), Expect = 8e-05
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Frame = +2
Query: 314 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG 433
CY C GHI+++C +S CYNC TGH AR+C G
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAG 151
Score = 35.1 bits (77), Expect = 0.022
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 146 SSSVCYKCNRTGHFARECT 202
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 78.2 bits (184), Expect = 2e-15
Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQR---EKCFKCNRTGHFARDCKEEA------- 307
CY C GH A++C G +R G + + C+ C GHFARDC++
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 308 -DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIARNCPEGGRESA 445
CY C G GHIA+ C +CY C TGH+AR+C G S+
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSS 275
Score = 74.9 bits (176), Expect = 2e-14
Identities = 42/117 (35%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 298
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 299 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGG 433
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG 247
Score = 69.7 bits (163), Expect = 8e-13
Identities = 37/104 (35%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------- 313
CY C GHFAR+C Q G + G + C+ C GH A+ C +
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGGGST----CYTCGGVGHIAKVCTSKIPSGGGGGGRA 253
Query: 314 CYRCNGTGHIARECAQSPDEPS--------CYNCNKTGHIARNC 421
CY C GTGH+AR+C + S C+ C K GH AR C
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 63.3 bits (147), Expect = 7e-11
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Frame = +2
Query: 146 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 310
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 311 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 421
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 422 PEGG 433
+ G
Sbjct: 212 RQNG 215
Score = 55.6 bits (128), Expect = 1e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +2
Query: 152 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 304
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 305 -ADRCYRCNGTGHIAREC 355
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 3e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 307
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 48.8 bits (111), Expect = 2e-06
Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 25/96 (26%)
Frame = +2
Query: 218 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 349
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 350 ECAQSPDEPS---------CYNCNKTGHIARNCPEG 430
+C QS S CY+C + GH+A++C G
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGG 179
Score = 32.3 bits (70), Expect = 0.16
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECT 202
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 74.5 bits (175), Expect = 3e-14
Identities = 37/95 (38%), Positives = 55/95 (57%)
Frame = +2
Query: 146 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 325
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTNDK-ACKNC 162
Query: 326 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 430
+GHIAR+C ++P C C+ +GH+AR+CP+G
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 67.7 bits (158), Expect = 3e-12
Identities = 33/90 (36%), Positives = 47/90 (52%)
Frame = +2
Query: 152 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 331
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 332 TGHIARECAQSPDEPSCYNCNKTGHIARNC 421
GH+A C+ +E C++C K+GH AR+C
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDC 127
Score = 64.9 bits (151), Expect = 2e-11
Identities = 38/102 (37%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Frame = +2
Query: 152 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 313
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 314 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDC 172
Score = 63.3 bits (147), Expect = 7e-11
Identities = 29/64 (45%), Positives = 32/64 (50%)
Frame = +2
Query: 242 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 422 PEGG 433
G
Sbjct: 109 SNEG 112
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR--CYRCN 328
VC C+ +GH AR C +G D G +R R+ + +RD + + C+ C
Sbjct: 177 VCNICSISGHVARHCPKGDSNYSDRG-SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCG 235
Query: 329 GTGHIAREC 355
G GH A EC
Sbjct: 236 GRGHRAYEC 244
Score = 37.1 bits (82), Expect = 0.005
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Frame = +2
Query: 155 VCYKCNRTGHFARECTQGGVVS--RDSGFN----RQREKCFKCNRTGHFARDCKEE---- 304
+C C + GH A +CT R SG R C C+ +GH AR C +
Sbjct: 139 LCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNY 198
Query: 305 ADRCYRCN-------GTGHIARECAQSPDEPSCYNCNKTGHIARNCP 424
+DR R G ++R+ C+NC GH A CP
Sbjct: 199 SDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 36.3 bits (80), Expect = 0.010
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 302 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 436
+ + C C GH AR+C+ + C NC GHIA C R
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAECTAESR 94
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 155 VCYKCNRTGHFARECTQGGVVSRDSGFNR 241
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 64.5 bits (150), Expect = 3e-11
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 33/136 (24%)
Frame = +2
Query: 140 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDC----- 295
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSG 288
Query: 296 -----------KEEADRCYRCNGTGHIAREC-AQSPDEP-------------SCYNCNKT 400
+ CY+C GH +R+C QS ++ CY C K
Sbjct: 289 NPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKA 348
Query: 401 GHIARNCPEGGRESAT 448
GH +R+C + + T
Sbjct: 349 GHWSRDCTSPAQTTNT 364
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 113 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 250
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 61.7 bits (143), Expect = 2e-10
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 19/88 (21%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFARDC------ 295
CY+C + GH C + S ++ FN R+ +C++C GHFAR+C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 296 -----KEEADRCYRCNGTGHIARECAQS 364
+E CYRCNG+GH AREC S
Sbjct: 347 STSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 328
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 329 GTGHIARECAQSPDEPS 379
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 52.8 bits (121), Expect = 1e-07
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 254 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 424
C+ C GH + +C R C+ C H A++C++ D CY C KTGH A++CP
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCP 224
Query: 425 E 427
+
Sbjct: 225 D 225
Score = 48.8 bits (111), Expect = 2e-06
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Frame = +2
Query: 116 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 295
A+ F P A S CY C GH + C ++R+ CF C H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 296 KEEADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGH 406
+ D CY C TGH A++C S C C GH
Sbjct: 205 SKGHD-CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 41.1 bits (92), Expect = 3e-04
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR------CY 319
C+ C H A++C++G C+ C +TGH A+DC ++ C
Sbjct: 191 CFICGSLEHGAKQCSKG-------------HDCYICKKTGHRAKDCPDKYKNGSKGAVCL 237
Query: 320 RCNGTGHIAREC-----AQSPDEPSCYNCNKTGHIARNCPEGG 433
RC GH C + + CY C GH+ C E G
Sbjct: 238 RCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLC--CVEPG 278
Score = 40.3 bits (90), Expect = 6e-04
Identities = 27/114 (23%), Positives = 39/114 (34%)
Frame = +2
Query: 107 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 286
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 287 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESAT 448
C + + S + CY C + GH AR CP S +
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTS 349
Score = 40.3 bits (90), Expect = 6e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 271
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 29.5 bits (63), Expect = 1.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 377 SCYNCNKTGHIARNCP 424
SCY+C + GH + NCP
Sbjct: 167 SCYSCGEQGHTSFNCP 182
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 58.0 bits (134), Expect = 3e-09
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE------EADRCY 319
C+ C+ H A+ C + R+ + C +C R GH ++C E E CY
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERN-------KICLQCRRRGHSLKNCPEKNNESSEKKLCY 128
Query: 320 RCNGTGHIARECAQSPDE-----PSCYNCNKTGHIARNCPE 427
C TGH C ++ SC+ C GHI++NCPE
Sbjct: 129 NCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPE 169
Score = 53.6 bits (123), Expect = 6e-08
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 310
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 311 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEG-GRESA 445
C+ C G GHI++ C ++ P C C H+ ++CP+ +ESA
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESA 203
Score = 50.8 bits (116), Expect = 4e-07
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Frame = +2
Query: 248 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 400
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 401 GHIARNCP 424
GH +CP
Sbjct: 134 GHSLSHCP 141
Score = 40.3 bits (90), Expect = 6e-04
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 314 CYRCNGTGHIARECAQSPD---EPSCYNCNKTGHIARNCPEGGRESA 445
C+ C+ HIA+ C + + C C + GH +NCPE ES+
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESS 122
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 367
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 4e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 311 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 298
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 365 PDEPSCYNCNKTGHIARNCPEG 430
P C+NC GH AR+C G
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 367
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 4e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 311 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 298
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 365 PDEPSCYNCNKTGHIARNCPEG 430
P C+NC GH AR+C G
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAG 76
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 367
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 48.8 bits (111), Expect = 2e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 305 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 322
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 365 PDEPSCYNCNKTGHIARNCPEG 430
P C+NC GH AR+C G
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAG 76
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSG 232
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 367
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 48.8 bits (111), Expect = 2e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 305 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 322
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 365 PDEPSCYNCNKTGHIARNCPEG 430
P C+NC GH AR+C G
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAG 87
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSG 232
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 367
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 48.8 bits (111), Expect = 2e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 305 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 322
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 365 PDEPSCYNCNKTGHIARNCPEG 430
P C+NC GH AR+C G
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAG 117
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSG 232
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR----- 313
+ VC +C GH C S + + KC+ CN GH C E
Sbjct: 25 AEVCLRCGGFGHDMTLCKY-----EYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTV 77
Query: 314 -CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC 421
CYRC GH C + D+ PSC+ C + GH C
Sbjct: 78 SCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 39.1 bits (87), Expect = 0.001
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVV------------SRDSGFNRQREKCFKCNRTGHFARD 292
S C+ C R GHF +C V DS R +E + GHF
Sbjct: 101 SPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE-EEEGHFEHQ 159
Query: 293 CKEEADRCYR--CNGTGHIARECAQSPDEPS------CYNCNKTGHIARNCPEGGR 436
C + + C++ G I+ + CY C GHIAR+CP +
Sbjct: 160 CPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQ 215
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Frame = +2
Query: 242 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 385
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 386 NCNKTGHIARNC 421
C + GH C
Sbjct: 81 RCGQLGHTGLAC 92
Score = 37.9 bits (84), Expect = 0.003
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 146 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 313
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 314 CYRCNGTGHIARECAQS 364
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Frame = +2
Query: 299 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGG 433
+EA+ C RC G GH C + CY CN GH+ C E G
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPG 70
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 83 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 217
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 2e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +2
Query: 206 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 349
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 350 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 436
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 152 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 325
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 326 NGTGHIAREC 355
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 37.5 bits (83), Expect = 0.004
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGG 211
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 2e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 206 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 379
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 380 CYNCNKTGHIARNCPEGG 433
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 46.8 bits (106), Expect = 7e-06
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 295
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.004
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGG 211
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 44.0 bits (99), Expect = 5e-05
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQG-GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 334
C C GH R C + +V++ G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSKSIVTK--GISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGE 349
Query: 335 GHIARECAQSPDEPSCYNCNKTGHIARNCP 424
+ E +C C K GH R CP
Sbjct: 350 N--SGEDGVGKITYACGFCKKMGHNVRTCP 377
Score = 33.5 bits (73), Expect = 0.067
Identities = 22/87 (25%), Positives = 35/87 (40%)
Frame = +2
Query: 173 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 352
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 353 CAQSPDEPSCYNCNKTGHIARNCPEGG 433
+ + C NC + GH CPE G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELG 283
Score = 33.1 bits (72), Expect = 0.089
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Frame = +2
Query: 254 CFKCNRTGHFARDCKE---EADRCYR---CNGTGHIARECAQSPD---------EPSCYN 388
C C + GH C E ADR +R C G GH R C +S C
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 389 CNKTGHIARNC 421
C + GH +R C
Sbjct: 326 CGERGHNSRTC 336
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 206 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 310
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.27
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGG 211
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.36
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 371 EPSCYNCNKTGHIARNCPEGG 433
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.48
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 275 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 373
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 206 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 310
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.27
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGG 211
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.36
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 371 EPSCYNCNKTGHIARNCPEGG 433
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.48
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 275 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 373
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +2
Query: 221 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 313
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.039
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSG 232
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.3 bits (65), Expect = 0.63
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 380 CYNCNKTGHIARNCP-EGGRE 439
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 203 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 355
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 314 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCP 424
CY+C GH AR C P +CY C++ GH + CP
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCP 76
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 337
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 338 H 340
H
Sbjct: 88 H 88
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 368 DEPSCYNCNKTGHIARNC 421
D +CY C K GH AR+C
Sbjct: 32 DPRACYKCGKLGHFARSC 49
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 143 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 247
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 203 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 298
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.27
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 215 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 355
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 0.83
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 368 DEPSCYNCNKTGHIARNCPEG 430
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 143 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 247
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 203 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 298
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.27
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 215 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 355
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 0.83
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 368 DEPSCYNCNKTGHIARNCPEG 430
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.003
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 247
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.051
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCK 298
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.1 bits (67), Expect = 0.36
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 311 RCYRCNGTGHIAREC 355
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 0.63
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 380 CYNCNKTGHIARNCPEGG 433
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 242 QREKCFKCNRTGHFARDC 295
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 341 IARECAQSP-DEPSCYNCNKTGHIARNCP 424
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 3.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 158 CYKCNRTGHFAREC 199
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.017
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 158 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 247
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 206 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 298
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 29.5 bits (63), Expect = 1.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 311 RCYRCNGTGHIAREC 355
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 380 CYNCNKTGHIARNCPEGG 433
CY C ++GH AR C G
Sbjct: 98 CYECGESGHFARECRSRG 115
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 254 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 424
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 332 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE 427
+G +A + + C+ C K GH R+C E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +2
Query: 155 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 295
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.029
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 248 EKCFKCNRTGHFARDC 295
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.12
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGG 211
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.16
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 371 EPSCYNCNKTGHIARNCPEGG 433
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 27.5 bits (58), Expect = 4.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 308 DRCYRCNGTGHIAREC 355
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.089
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 254 CFKCNRTGHFARDCKEEA 307
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 29.9 bits (64), Expect = 0.83
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVS 220
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 26.6 bits (56), Expect = 7.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 380 CYNCNKTGHIARNCP 424
C+ C + GH +R+CP
Sbjct: 8 CFKCGRPGHWSRDCP 22
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.12
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 311 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 433
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.21
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 242 QREKCFKCNRTGHFARDCK 298
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 341 IARECAQSPDEPS-CYNCNKTGHIARNC 421
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.36
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +2
Query: 314 CYRCNGTGHIARECA-QSPDEP------SCYNCNKTGHIARNCP 424
C C T H+ +C SP P CY C GH++ CP
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
Score = 29.9 bits (64), Expect = 0.83
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +2
Query: 245 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 355
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 371 EPSCYNCNKTGHIARNCPEGGRESAT 448
E +CY C + GHIA+ CP RE+ T
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTT 247
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 314 CYRCNGTGHIAREC 355
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.48
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 155 VCYKCNRTGHFAREC 199
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.48
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 254 CFKCNRTGHFARDC--KEEAD 310
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 0.63
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 380 CYNCNKTGHIARNC 421
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 0.83
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 314 CYRCNGTGHIAREC 355
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 320 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 433
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 155 VCYKCNRTGHFARECTQGG 211
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 30.3 bits (65), Expect = 0.63
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 299 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 433
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 368 DEPSCYNCNKTGHIARNCPEGGRESA 445
D P C+NC H R CP SA
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSA 264
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 0.63
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 128 SKPIAMSSSVCYKCNRTGHFAREC 199
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.63
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 155 VCYKCNRTGHFARECTQGG 211
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 30.3 bits (65), Expect = 0.63
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 314 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 448
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 224 DSGFNRQREK-CFKCNRTGHFARDC 295
D G ++ R K CF C H AR+C
Sbjct: 77 DIGMSKARFKFCFNCGDMNHLARNC 101
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 0.63
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 299 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 436
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 368 DEPSCYNCNKTGHIARNCPEGGRESA 445
D P C+NC H R CP SA
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSA 219
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 385
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 0.63
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 299 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 436
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 368 DEPSCYNCNKTGHIARNCPEGGRESA 445
D P C+NC H R CP SA
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSA 219
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 251 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 385
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 29.9 bits (64), Expect = 0.83
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +2
Query: 254 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 418
C C+R H A + R C RCN R C+ C NC+ +GH +N
Sbjct: 25 CLSCDRNVHSANALSKRHSRTLVCERCNAQPASVR-CSDERVS-LCQNCDWSGHDGKN 80
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 0.83
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 296 KEEADRCYRCNGTGHIARECAQSP 367
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 254 CFKCNRTGHFARDC 295
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 4.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQG 208
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 206 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 295
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +2
Query: 173 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 325
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 326 NGTGHIARECA 358
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +2
Query: 146 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 322
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 323 CNGT 334
N T
Sbjct: 504 TNST 507
Score = 26.6 bits (56), Expect = 7.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 377 SCYNCNKTGHIARNCP 424
+CY C + GH++ CP
Sbjct: 480 NCYECGEKGHLSTACP 495
Score = 26.6 bits (56), Expect = 7.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 377 SCYNCNKTGHIARNCP 424
+CY C + GH++ CP
Sbjct: 575 NCYECGEKGHLSSACP 590
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 206 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 295
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 1.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 380 CYNCNKTGHIARNCP 424
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 143 MSSSVCYKCNRTGHFAREC 199
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 233 FNRQREKCFKCNRTGHFARDCKEEADR 313
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 377 SCYNCNKTGHIARNCPE 427
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +2
Query: 314 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 421
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 245 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 355
+ C C+ T H +C ++ +CY C G GH++ C
Sbjct: 295 KRPCEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 116 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 226
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 2.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 299 EEADRCYRCNGTGHIARECAQS 364
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 2.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 368 DEPSCYNCNKTGHIARNCPE 427
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 86 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 229
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 27.9 bits (59), Expect = 3.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 380 CYNCNKTGHIARNCPEGG 433
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 314 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 424
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.9 bits (59), Expect = 3.4
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +2
Query: 128 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 307
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 308 DRCYRCNGTGHIAREC 355
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 14/50 (28%)
Frame = +2
Query: 314 CYRCNGTGHIARECAQSPDE--------------PSCYNCNKTGHIARNC 421
C+ C GHI C + E P CY+ GHI RNC
Sbjct: 628 CHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +2
Query: 323 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 424
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 248 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 355
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVVSRDS---GFN-RQREKCFKCNRTGH--FARDCKEEAD 310
S+VC C + GH + C SR+S N R E CN G R EA+
Sbjct: 764 SNVCIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEAN 823
Query: 311 R 313
R
Sbjct: 824 R 824
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 335 GHIARECAQSP-DEPSCYNCNKTGHIARNC 421
G+ AR P P C NC + GH+ C
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRC 328
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 242 QREKCFKCNRTGHFARDC 295
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 314 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 424
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 449 ASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA 336
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 407 CGPSCCSCNTTARPGSVRTRALCAPCRYICS 315
C P CC CN+ + VRT Y CS
Sbjct: 638 CRPLCCVCNSRCKLPFVRTLPEDGADLYFCS 668
>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 790
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = +2
Query: 305 ADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGH 406
AD CYRC + C Q + S CY C+K H
Sbjct: 36 ADLCYRCGSAYESSLFCEQFHKDQSGWRECYLCSKRLH 73
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +2
Query: 254 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR 415
C C+ GH C C G G + P SC C TGHI +
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIK 232
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +2
Query: 254 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR 415
C C+ GH C C G G + P SC C TGHI +
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIK 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,678,558
Number of Sequences: 28952
Number of extensions: 184384
Number of successful extensions: 1032
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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