Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0330
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    32   0.089
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    31   0.16 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   1.9  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   3.4  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   4.4  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   5.9  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   7.8  

>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 294 NITTLKQGYFTSFYHGTIHH*LFIHPQ 214
           N TT+ + YF++F+ G IH  LF +P+
Sbjct: 31  NNTTISKPYFSTFFEGGIHSLLFFYPK 57


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 462 HVEQTIDNRAPRTYNTQRTDPSVSNVPS 379
           +V +  +N +P  Y+  RT+P+V+N+PS
Sbjct: 384 NVSRNSNNNSPEGYDNNRTNPTVNNLPS 411


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 279  KQGYFTSFYHGTI----HH*LFIHPQDRSFSRPFANCVKVPGT*LV 154
            K  ++  FY G +     H  FI PQD+S   P   C  V G+ ++
Sbjct: 930  KLRWYKKFYLGELINKTRHCTFIEPQDKSLVTPQLLCATVDGSLMI 975


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 636 TLRGHLAKIYAMHWGSD 686
           TLRGH+A +Y   W +D
Sbjct: 426 TLRGHVAAVYQCAWSTD 442


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = -3

Query: 571  VSHAAFLASLIAFLRVSASWRRLSSSFM--IDTRVTHS 464
            ++HA  L+S++ +L+VS   RR+++  +  I+ R+T S
Sbjct: 1120 INHADILSSILDYLQVSKDKRRMATHILGQINQRLTLS 1157


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 565 HAAFLASLIAFLRVSASWRRLSSSFMIDTRV 473
           H    +S+IAF++ +  WR L SS  I+  V
Sbjct: 663 HDESSSSMIAFVKPNPVWRNLGSSLHIEKLV 693


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 241 PPLAFHTPSRSVLFTAICKLRQSSWNVIGVFC 146
           P ++FH  SR  L   I  + +S W ++   C
Sbjct: 279 PEISFHDTSRLDLVRNIASIPKSRWKLVCCIC 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,873
Number of Sequences: 5004
Number of extensions: 61294
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)