Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0330
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924...    31   0.65 
02_01_0313 + 2097302-2097657,2099389-2100502                           30   1.5  
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623...    28   6.0  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    28   8.0  

>04_04_0276 +
           24091360-24091464,24091580-24091713,24091813-24092454,
           24092858-24093044
          Length = 355

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 624 ASVCDRSAPGSRWPGPATCRMPLSSH 547
           ASVCDR+AP     G   CR+PL SH
Sbjct: 272 ASVCDRAAPHD--DGDRPCRVPLCSH 295


>02_01_0313 + 2097302-2097657,2099389-2100502
          Length = 489

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 224 YTLKIGPFHGHLQIAS-KFLERDWCFLR 144
           Y L +G  HG L+  + K+LER WC L+
Sbjct: 346 YQLNLGQSHGLLKAKNVKYLERKWCVLK 373


>01_06_1330 -
           36361275-36361448,36361778-36361973,36362248-36362325,
           36362685-36362807,36363206-36363463,36363914-36364073,
           36364702-36364812,36365159-36365429,36365514-36365663,
           36366383-36367090
          Length = 742

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +3

Query: 315 KKWLSNLNGDIEIAR-KSLER--RSKGHC*QKDRCVACCTCAARGCRSSVP 458
           ++++  L+ + EI R  S ER  R + HC  KD+ ++C   A +G ++ +P
Sbjct: 179 REYIPCLDNEEEIRRLPSTERGERFERHCPAKDKGLSCLVPAPKGYKAPIP 229


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 545 RCEESGMRHVAGPGHLEPGADRSH 616
           RC  S +R ++ PG L  G DR+H
Sbjct: 741 RCSPSMLRWLSAPGSLAGGIDRAH 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,433,458
Number of Sequences: 37544
Number of extensions: 416167
Number of successful extensions: 1014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)