Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0330
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 80 1e-15
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10) 32 0.50
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 29 2.7
SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 29 2.7
SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05) 29 2.7
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 29 2.7
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.5
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30) 28 8.1
SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +3
Query: 489 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 668
M+EL+ LRQE+E LK IRDARK A DT+LAQ ++N++ +GRIQMRTRRTLRG L I +
Sbjct: 1 MSELEQLRQESEALKCQIRDARKIAADTTLAQVSANIDQVGRIQMRTRRTLRGGLDNICS 60
Query: 669 MH 674
++
Sbjct: 61 IY 62
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 512 PGGGNP*KRY*RCEESGMRHVAGPGHLEPGADRSHTDAHPTNLARSS 652
PGGG P R +RHV P HL G +S+TD + NL+ S
Sbjct: 1289 PGGGRPSPRPSSPRTGHVRHVTSPRHLS-GVSKSNTDYNLHNLSTGS 1334
>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
Length = 345
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 573 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSD 686
++ + LE + M+ RR L+GH K+ +M W D
Sbjct: 199 TVKDVSRKLESLQGCHMKVRRILKGHQGKVLSMDWSGD 236
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 447 SSVPRELCVTRVSIMNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEP 605
S++ + + SI +ELD + AE L + R+ R + + +Q+T+NL P
Sbjct: 185 STINSNVSLVAHSIGSELDMRAKSAEDLNHINRERRVLSGPNTRSQSTANLRP 237
>SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 405 RCVACCTCAARGCRSSVPRELCV 473
RC A C C GCR + RE V
Sbjct: 42 RCTAPCVCTQEGCRKTFVREAAV 64
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 545 RCEESGMRHVAGPGHLEPGA 604
RCE SG H A P H PGA
Sbjct: 489 RCELSGATHFAFPAHFTPGA 508
>SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05)
Length = 168
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 545 RCEESGMRHVAGPGHLEPGA 604
RCE SG H A P H PGA
Sbjct: 70 RCELSGATHFAFPAHFTPGA 89
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 447 SSVPRELCVTRVSIMNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEP 605
S++ + + SI +ELD + AE L + R+ R + + +Q+T+NL P
Sbjct: 1910 STINSNVSLVAHSIGSELDMRAKSAEDLNHINRERRVLSGPNTRSQSTANLRP 1962
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -3
Query: 445 RQPRAAHVQHATHRSFCQQCPFDRRSSDFRAISISPL--RLDNHFLAHF-VSFQYHHTKT 275
+Q R H Q A +S PF+ S DF + S + +L N ++ F + HH +
Sbjct: 572 KQKRPKHAQRAPMQSIQTTAPFELISLDFLHLEKSSVAEKLYNDYIMRFGFPLRIHHDQG 631
Query: 274 RIFHKFLSRNNPPLAFHTPSRS 209
+ F L ++ L+ SR+
Sbjct: 632 KEFENDLHKHLEKLSGVAHSRT 653
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 474 TRVSIMNELDSLRQEAETLKNAIRDARKAACDTSLAQAT 590
T+ S+ ELD RQ + + ++ + D+R+ +S++ +T
Sbjct: 109 TQSSLAEELDDTRQRSRSTEDLLSDSRRYGSSSSISSST 147
>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
Length = 351
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 545 RCEESGMRHVAGPGHLEPGA 604
+C+ +G H A PGHL PGA
Sbjct: 97 QCQLNGDTHFAFPGHLIPGA 116
>SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 574 DVSHAAFLASLIAFLRVSASWRRLSSSFMIDTRVTHSSRGTD--DRQPRAAHVQHATH 407
D +HA F + + + VSAS + + I R+ TD RQP A Q + H
Sbjct: 143 DATHAYFASVELGSVDVSASRNKSMINVTISNRLVKVKADTDLIQRQPTAPDAQDSKH 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,652,994
Number of Sequences: 59808
Number of extensions: 500543
Number of successful extensions: 1453
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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