Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0330
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    34   0.10 
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta...    30   1.3  
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta...    30   1.3  
At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s...    28   5.0  
At3g43610.1 68416.m04640 tubulin family protein                        27   8.8  

>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 462 ELCVTRV-SIMNELDSLRQEAETLKNAIRDARK-AACDTSLAQATSNLEPIGRIQMR 626
           ELC+ R+ S+M ELDSLR E ++L+    D  K     TS + + S   PI   Q R
Sbjct: 97  ELCLNRLQSLMTELDSLRHENDSLRFENSDLLKLIRISTSSSSSVSPPAPIHNRQFR 153


>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 347

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +3

Query: 480 VSIMNELDSLRQEA-ETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLR 644
           VS + E  ++  E    L++ +R  R    DT +A+ ++         G   +   RTL+
Sbjct: 3   VSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQ 62

Query: 645 GHLAKIYAMHW 677
           GH  K+Y++ W
Sbjct: 63  GHTGKVYSLDW 73


>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 377

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +3

Query: 480 VSIMNELDSLRQEA-ETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLR 644
           VS + E  ++  E    L++ +R  R    DT +A+ ++         G   +   RTL+
Sbjct: 3   VSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQ 62

Query: 645 GHLAKIYAMHW 677
           GH  K+Y++ W
Sbjct: 63  GHTGKVYSLDW 73


>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 537

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = -3

Query: 256 LSRNNPPLAFHTPSRSVLFTAICKLRQSSWNVIGVFCAGEVNE---KRHLSEPLNH*ILY 86
           LS    P +F+     VLF  +  + ++   +IG+F  G VNE      L + LN  +L 
Sbjct: 422 LSAIATPRSFYLVIFWVLFENVMAMHRTKGTLIGLFEGGRVNEWVVTEKLGDTLNTKLLP 481

Query: 85  Q-GRIVLFPRHEELQNFTLNGYI 20
           Q GR+   P+   L+   +  YI
Sbjct: 482 QNGRL---PKRVNLKEMMMGIYI 501


>At3g43610.1 68416.m04640 tubulin family protein
          Length = 1120

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 126 FSLTSPAQKTPITFQEL*RNLQMAVKRTD 212
           FS TSP   +PITF +L  ++++ +K+ D
Sbjct: 405 FSTTSPGYPSPITFSKL--HIEVMIKKRD 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,430,853
Number of Sequences: 28952
Number of extensions: 324892
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)