Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0329
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.8  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 FKVLSSLALTINLLSEDHATS 219
           F V SS+ LT+ +L+  H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 FKVLSSLALTINLLSEDHATS 219
           F V SS+ LT+ +L+  H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 FKVLSSLALTINLLSEDHATS 219
           F V SS+ LT+ +L+  H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 FKVLSSLALTINLLSEDHATS 219
           F V SS+ LT+ +L+  H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 FKVLSSLALTINLLSEDHATS 219
           F V SS+ LT+ +L+  H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 547 LYPKFDINHHNLKK 506
           L P  D+N  NLKK
Sbjct: 68  LEPNLDVNQGNLKK 81


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 43  PNYTLKFTLAGHTKAVSSVKFSPN 114
           PN  + F++ GH   +S    +PN
Sbjct: 43  PNSPVSFSMGGHGSLLSPSGNTPN 66


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 208 MGISDVAWSSDSRLIV 255
           MGI+ + W+S  RL V
Sbjct: 338 MGITPMIWNSTRRLFV 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.131    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,886
Number of Sequences: 336
Number of extensions: 3515
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)