Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0329
(708 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 27 0.23
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 27 0.23
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 1.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.6
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 2.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 5.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 5.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 5.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 5.0
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 8.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 8.7
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 26.6 bits (56), Expect = 0.23
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 394 DESVRIWDVRTGKCLKPLPAHSDPVSAVHFNRDGSLIVSSS 516
+ESV ++RT CL P P + ++ +R+G I S
Sbjct: 615 EESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHKS 655
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 26.6 bits (56), Expect = 0.23
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 394 DESVRIWDVRTGKCLKPLPAHSDPVSAVHFNRDGSLIVSSS 516
+ESV ++RT CL P P + ++ +R+G I S
Sbjct: 583 EESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHKS 623
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 588 PXCFVC*ILTEWKIYI 635
P CFVC L W IY+
Sbjct: 413 PVCFVCFNLMYWIIYL 428
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 588 PXCFVC*ILTEWKIYI 635
P CFVC L W IY+
Sbjct: 413 PVCFVCFNLMYWIIYL 428
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 588 PXCFVC*ILTEWKIY 632
P CFVC L W IY
Sbjct: 351 PVCFVCFNLMYWIIY 365
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 455 CAGNGFRHFPVLTSHIRTLSSKLPDTI 375
CAG G R VL+ + +L+S L TI
Sbjct: 9 CAGGGGRLSSVLSLSLTSLASSLIFTI 35
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 455 CAGNGFRHFPVLTSHIRTLSSKLPDTI 375
CAG G R VL+ + +L+S L TI
Sbjct: 9 CAGGGGRLSSVLSLSLTSLASSLIFTI 35
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 455 CAGNGFRHFPVLTSHIRTLSSKLPDTI 375
CAG G R VL+ + +L+S L TI
Sbjct: 9 CAGGGGRLSSVLSLSLTSLASSLIFTI 35
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 455 CAGNGFRHFPVLTSHIRTLSSKLPDTI 375
CAG G R VL+ + +L+S L TI
Sbjct: 9 CAGGGGRLSSVLSLSLTSLASSLIFTI 35
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 45 ELYPQIHSRWSYKGCVIGKIQ 107
+LY Q W Y VI ++Q
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQ 482
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.4 bits (43), Expect = 8.7
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 47 FGFATEDLFD 18
FGF+TED+ D
Sbjct: 1416 FGFSTEDILD 1425
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.316 0.131 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,284
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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