Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0327
         (433 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8WPL2 Cluster: Similar to protocadherin; n=1; Oikopleu...    33   2.6  
UniRef50_Q10Q62 Cluster: Putative cyclin-F3-2; n=9; Magnoliophyt...    32   5.9  

>UniRef50_Q8WPL2 Cluster: Similar to protocadherin; n=1; Oikopleura
           dioica|Rep: Similar to protocadherin - Oikopleura dioica
           (Tunicate)
          Length = 976

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +2

Query: 275 KQDSI*SLLILVTRNVMAQTLFPVCNSNLWESIKCLPNKRIFYYLIIKMN 424
           K +SI  LLIL+   V+AQ L   CN  + ++ +    +RIFY  +IK N
Sbjct: 4   KINSILCLLILLKNAVLAQRLL-TCNGEVTKNFEKDLTERIFYTAVIKFN 52


>UniRef50_Q10Q62 Cluster: Putative cyclin-F3-2; n=9;
           Magnoliophyta|Rep: Putative cyclin-F3-2 - Oryza sativa
           subsp. japonica (Rice)
          Length = 406

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 276 LF*CEFTNSPIMITMQIMCIYLHILNL 196
           LF C  +N PI I +++MCIYL  L+L
Sbjct: 277 LFSCRGSNRPINIRLELMCIYLAELSL 303


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,036,710
Number of Sequences: 1657284
Number of extensions: 7091543
Number of successful extensions: 16360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16358
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)