Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0327
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   2.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   3.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   5.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.0  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 433 NLEIHFNNQIIKNAFIWQTLNTFPQIRVAHRKQSLSHN 320
           NLE   N+  IKN  +    N   ++    R   LSHN
Sbjct: 591 NLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHN 628


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 406 IIKNAFIWQTLNTFPQIRVAHRKQSL-SHNIPCYQY 302
           I K  F++ TLN  PQ+  +     + SHN P + Y
Sbjct: 576 IDKPGFVYHTLNDIPQLNSSTIGSYVHSHNPPYFDY 611


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 330 RLCFLCAT-RICGKVLSVCQINAFF 401
           + C+L    RI G + S C+ NAFF
Sbjct: 438 QFCYLAKNYRISGDISSACKENAFF 462


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
 Frame = -2

Query: 381 KHLILSHKFELHTGNKV*AITFRVTNINKLQIESCLF-----*CEFTN-SPIMITMQ--- 229
           K+LI+   +  H       +     +++++Q+ESCLF        F N   I++T Q   
Sbjct: 161 KNLIILLTYRDHDAIPTATLLNPTLDVSEIQLESCLFVPMVPASYFLNIGTIVVTFQLNV 220

Query: 228 IMCIYLHILN-LHLNSIARQTSRD 160
           + C+ L  +N L LN+I    S D
Sbjct: 221 LRCLSLSQINGLSLNTINNLQSED 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,600
Number of Sequences: 5004
Number of extensions: 34682
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)