Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0327
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0104 + 5645285-5645677,5645990-5646034,5646225-5646454,564...    32   0.23 

>03_02_0104 +
           5645285-5645677,5645990-5646034,5646225-5646454,
           5646549-5646624,5646705-5646781,5646960-5646990,
           5647058-5647210,5647287-5647421,5647526-5647606
          Length = 406

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 276 LF*CEFTNSPIMITMQIMCIYLHILNL 196
           LF C  +N PI I +++MCIYL  L+L
Sbjct: 277 LFSCRGSNRPINIRLELMCIYLAELSL 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,669,215
Number of Sequences: 37544
Number of extensions: 168552
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)