Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0327
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-7|AAK18878.1|   84|Caenorhabditis elegans Hypothetical pr...    28   2.5  
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    27   5.8  

>U58749-7|AAK18878.1|   84|Caenorhabditis elegans Hypothetical
           protein B0496.7 protein.
          Length = 84

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 315 GMLWLRLCFLCATRICGKVLS 377
           G  W R C  CA + CGK LS
Sbjct: 21  GKDWHRPCLKCANKACGKTLS 41


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 314 RNVMAQTLFPVCNSNLWESIKCLPNKRI 397
           +NV+AQ  + +CN  + E +KC PN  I
Sbjct: 54  QNVLAQ--YSMCNDVMHEGVKCTPNDPI 79


>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = -3

Query: 170 PLAIVSDCVKYSKYH----EKETKVTSEITNRLKDKTQCLS 60
           PL I+S  + YSK+     E+ETK+ ++ITN + +   C++
Sbjct: 264 PLLIISR-ILYSKWFANTMEEETKLQNKITNLVNETFNCIT 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,518,883
Number of Sequences: 27780
Number of extensions: 185880
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)