Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0327
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.8  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 13 CTKYKSCIFLLRSDFNDKH 69
          C +  SC + L+  F DKH
Sbjct: 11 CRRNFSCYYSLKRHFQDKH 29


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 143 KYSKYHEKETKVTSEITNRLKD 78
           +Y K H ++ K+  E TNR ++
Sbjct: 17  RYEKLHNEKEKLLEERTNRKRN 38


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 143 KYSKYHEKETKVTSEITNRLKD 78
           +Y K H ++ K+  E TNR ++
Sbjct: 17  RYEKLHNEKEKLLEERTNRKRN 38


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -1

Query: 415 NNQIIKNAFIWQTLNTFPQIRVAHRKQSLSHNIPCYQY*QASNRVLFI 272
           N  +  +A  +  + TFP +    R+++L H +  +   + SN   F+
Sbjct: 178 NIHLFHDASNFIAMETFPSVYSKTRRRALEHTLDRFHNDKYSNVPYFL 225


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 418 FNNQIIKNAFIWQTLNT 368
           FNN + K+A I  T+N+
Sbjct: 307 FNNNVYKDALIVCTVNS 323


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 418 FNNQIIKNAFIWQTLNT 368
           FNN + K+A I  T+N+
Sbjct: 360 FNNNVYKDALIVCTVNS 376


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 49  SDFNDKHCVLSFNLFVISEVTLVSF 123
           S+    HCV+  N F     TL SF
Sbjct: 187 SETGPSHCVVCQNFFYQIYATLGSF 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,221
Number of Sequences: 438
Number of extensions: 2959
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)