Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0327
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60930.1 68418.m07643 chromosome-associated kinesin, putative...    27   4.1  
At1g22000.1 68414.m02752 F-box family protein contains F-box dom...    27   7.2  
At3g23260.1 68416.m02932 F-box family protein contains Pfam PF00...    26   9.6  
At1g13200.1 68414.m01531 F-box family protein contains F-box dom...    26   9.6  

>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
           microtubule-associated motor KIF4 , Mus musculus,
           PIR:A54803
          Length = 1294

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 228 IMCIYLHILNLHLNSIARQTSRDSVRLRE 142
           I+C  LH+++L  +  A++T  D +RL+E
Sbjct: 252 ILCAKLHLVDLAGSERAKRTGADGMRLKE 280


>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 727

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 43  LRSDFNDKHCVLSFNLFVISEVTLVSFSWYLEYF 144
           LRS  + KH  L F+  +++    + FSW +E++
Sbjct: 302 LRSLSSVKHLFLLFSKSMVACCNAIKFSWLIEFY 335


>At3g23260.1 68416.m02932 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 362

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 226 NLHGYHNRAVCKFTLK*TGLYLKLVNIGNT-ECYG 327
           NLHG HN     F L  + LYLK  +I N   C G
Sbjct: 70  NLHGVHNNVAQSFELG-SRLYLKDPHISNVFHCDG 103


>At1g13200.1 68414.m01531 F-box family protein contains F-box domain
           Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
           interaction domain
          Length = 435

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 356 NLWESIKCLPNKRIFYY 406
           N W  + C P+ +IFYY
Sbjct: 248 NAWRYLACTPSHQIFYY 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,597,796
Number of Sequences: 28952
Number of extensions: 157847
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)