Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0323
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 106 9e-25
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 60 1e-10
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 29 0.21
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 1.5
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.0
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 25 2.6
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 2.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 3.5
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 4.6
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 4.6
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 25 4.6
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 24 6.1
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 24 6.1
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 106 bits (255), Expect = 9e-25
Identities = 50/83 (60%), Positives = 66/83 (79%)
Frame = +2
Query: 107 MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQI 286
+N IR L + V+N+IAAGEI++RP NA+KELIENSLDA ST+I + +K GGLK LQI
Sbjct: 3 VNSRAKIRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQI 62
Query: 287 QDNGTGIRNEDLGIVCERFTTSK 355
DNG+GI+ +DL +C+RF+TSK
Sbjct: 63 TDNGSGIQYDDLPYLCQRFSTSK 85
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 59.7 bits (138), Expect = 1e-10
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +2
Query: 125 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 304
++ + V++I +G+++ A+A+KEL+ENSLD+ +T I I K+ G+ +++ DNG+G
Sbjct: 4 VKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSG 63
Query: 305 IRNEDLGIVCERFTTSK 355
I D + ++ TSK
Sbjct: 64 IDAGDYESIGKKHFTSK 80
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 29.1 bits (62), Expect = 0.21
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 125 IRKLSEEVVNRIA-AGEIVQRPANALKELIENSLDAKSTNIIITVK 259
I KLSE+ N A E R LK+L+EN L+ N+I T+K
Sbjct: 261 IDKLSEQSGNVTADTNEHYDRAMQYLKQLVENILNRSLDNLIDTLK 306
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 1.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 240 LVDLASKLFS-ISSFNALAGLCTISPAAIRFTTSSLSFRIIPGSFIY 103
L+ L +K + SSFN + +CTI I SS S GS+I+
Sbjct: 187 LIVLPTKFLARFSSFNVVFQICTILIFIISLAASSTSETRNTGSYIF 233
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 152 NRIAAGEIVQRPANALKELIENSLDAKSTNIIITV 256
+RI E++Q P L ++I + KST +II V
Sbjct: 99 SRIRPKELLQEPQTTLPDIISTVNNDKSTCLIIQV 133
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 2.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 137 SEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGG 268
S E NR A E+V+ A + LI DAKS ++ V G
Sbjct: 208 SGECKNRKYAEEVVRECNEAWERLITGKTDAKSDFSLVNVSVTG 251
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 113 EPGIIRKLSEEVVNRIAAGEIVQRPANALKEL 208
EP ++RK+++E V A E+V NA++E+
Sbjct: 395 EP-LVRKIADEFVTSGVANEVVCAGINAIREV 425
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 3.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 188 ANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRNEDLGIVC 334
ANA E I ++L+A S I GGL + ++ + G + + ++C
Sbjct: 1323 ANATDEEIWHALEAASLKQFIQTLDGGL-YSRVTEGGANLSSGQRQLMC 1370
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 224 DAKSTNIIITVKSGGLKFLQI 286
D + +I+V GGLKFLQ+
Sbjct: 646 DNSGKDFLISVSLGGLKFLQL 666
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 152 NRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKS 262
N+I+ + LKE ++ LD K +N+ +KS
Sbjct: 408 NKISENNELLNENRVLKEKLQTYLDKKESNVTSKIKS 444
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/49 (18%), Positives = 28/49 (57%)
Frame = +2
Query: 113 EPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVK 259
E ++ ++ + + + ++P+N + L++ S+DAK +++ ++K
Sbjct: 243 ETSVVHRIFGGYLRQQILCSVCKKPSNTYQALLDLSVDAKGSSLADSLK 291
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.2 bits (50), Expect = 6.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 232 FGIQAVFYKFF*CISWSLHY 173
FGIQ +F FF +++ +HY
Sbjct: 102 FGIQELFSVFFSMLNFMIHY 121
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 24.2 bits (50), Expect = 6.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 107 MNEPGIIRKLSEEVVNRI 160
M+ PG+I+K+ E++ NR+
Sbjct: 1 MDFPGLIKKIKEDLENRL 18
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,996
Number of Sequences: 5004
Number of extensions: 24451
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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