Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0323
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 113 5e-26
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 58 2e-09
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 46 7e-06
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 28 1.9
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657... 27 4.3
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600... 27 4.3
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 27 5.7
06_03_0788 - 24603849-24603949,24604030-24604123,24604206-246044... 27 5.7
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 26 7.6
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 113 bits (271), Expect = 5e-26
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +2
Query: 113 EPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQD 292
EP IR+L E VVNRIAAGE++QRP++A+KELIENSLDA ++++ + VK GGLK +Q+ D
Sbjct: 14 EPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSD 73
Query: 293 NGTGIRNEDLGIVCERFTTSK 355
+G GIR EDL I+CER TTSK
Sbjct: 74 DGHGIRFEDLAILCERHTTSK 94
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 58.4 bits (135), Expect = 2e-09
Identities = 26/61 (42%), Positives = 43/61 (70%)
Frame = +2
Query: 125 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 304
IR + + V+RI +G+++ ++A+KEL+ENSLDA +T + +T++S G + DNGTG
Sbjct: 9 IRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSFTVADNGTG 68
Query: 305 I 307
I
Sbjct: 69 I 69
>09_06_0205 -
21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 46.4 bits (105), Expect = 7e-06
Identities = 22/77 (28%), Positives = 50/77 (64%)
Frame = +2
Query: 125 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 304
I++L + V + + + ++ + ++EL+ NS+DA ++ I I+V + +++++D+G G
Sbjct: 4 IKRLPKSVHSSLRSSIVLFDLSRVVEELVYNSIDANASKIDISVNARAC-YVKVEDDGCG 62
Query: 305 IRNEDLGIVCERFTTSK 355
I ++L +V E++ TSK
Sbjct: 63 ITRDELVLVGEKYATSK 79
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 267 PPDF----TVIMMLVDLASKLFSISSFNALAGLCTISPAAIRFTTSSLSF 130
PP F ++IM++V L + + S+SS++A + L +SP + + F
Sbjct: 544 PPTFHFKTSIIMVIVSLVASVDSLSSYHATSLLVNLSPPTRGVVSRGIGF 593
>12_02_0776 -
23064167-23064239,23065214-23065518,23065614-23065727,
23065812-23065918,23065997-23066143,23066227-23066326,
23066421-23066522,23066702-23066776,23066973-23067152,
23067266-23067355,23067435-23067559,23067847-23067910,
23067993-23068197,23068818-23068966
Length = 611
Score = 27.1 bits (57), Expect = 4.3
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 321 KSSFLIPVPLSCICKNFKPPDFTVIMMLVDLASKLFSISSFNALAGLCTISPAAIRFTTS 142
K ++P ++ + NF +M L + S S A +GLC+I F +S
Sbjct: 379 KQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGISPSIVGAFSGLCSIMGLVATFISS 438
Query: 141 SLSFRI 124
SL R+
Sbjct: 439 SLVERV 444
>01_01_0774 -
6004040-6004371,6004634-6005215,6005391-6005657,
6005845-6006163
Length = 499
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 264 PDFTVIMMLVDLASKLFSISSFNALAGLCTISPAAIRFTTSSLSFRIIPGSFIYKV 97
PD +I+ LAS LFS FN L A + +S ++I F +V
Sbjct: 392 PDTAIIIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKVIMNMFDVEV 447
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 333 HTIPKSSFLIPVPLSCICKNFKPPDFTVIM 244
HT+ ++ +P + CI +NF+ D TV++
Sbjct: 502 HTLNATAVAVPRLIICILENFQQEDGTVVI 531
>06_03_0788 -
24603849-24603949,24604030-24604123,24604206-24604413,
24604727-24604839,24605679-24605816,24605916-24605999,
24606517-24606675,24606754-24606837,24607505-24607840,
24607941-24608042,24608970-24609153,24609699-24610044,
24610444-24610591,24611053-24611203,24611786-24611867,
24612314-24612362
Length = 792
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 194 ALKELIENSLDAKSTNIIITVKS 262
A+ ELI+NS DA ++ + I+VKS
Sbjct: 244 AIAELIDNSRDADASRLNISVKS 266
>01_05_0659 -
24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 122 IIRKLSEEVVNRIAAGEIVQRPANAL-KELIENSLDAKSTNIII 250
++R +S R+ GE++ PANAL + I LD+ +T I+
Sbjct: 341 MVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,996,688
Number of Sequences: 37544
Number of extensions: 135850
Number of successful extensions: 324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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