Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0323
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   1e-31
SB_16684| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   5e-09
SB_31218| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   6e-09
SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   3e-06
SB_23452| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.003
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.64 
SB_6051| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)            27   5.9  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score =  132 bits (318), Expect = 1e-31
 Identities = 63/77 (81%), Positives = 69/77 (89%)
 Frame = +2

Query: 125 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 304
           IRKL E VVNRIAAGE++QRPANALKE+IEN LDAKST+I +TVKSGGLK LQIQDNG G
Sbjct: 7   IRKLDETVVNRIAAGEVIQRPANALKEMIENCLDAKSTSITVTVKSGGLKLLQIQDNGCG 66

Query: 305 IRNEDLGIVCERFTTSK 355
           IR ED+ IVCERFTTSK
Sbjct: 67  IRKEDMHIVCERFTTSK 83


>SB_16684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 25/74 (33%), Positives = 47/74 (63%)
 Frame = +2

Query: 134 LSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRN 313
           +  + V++I +G++V   A A+KEL+ENSLDA +T++ + +K  G   +++ DNG G+  
Sbjct: 19  IDSKSVHQICSGQVVLNLATAMKELLENSLDAGATSVDVRLKEHGSHSIEVSDNGAGVEP 78

Query: 314 EDLGIVCERFTTSK 355
           ++   +  +  TSK
Sbjct: 79  QNFEALTLKHYTSK 92


>SB_31218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 25/74 (33%), Positives = 47/74 (63%)
 Frame = +2

Query: 134 LSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRN 313
           +  + V++I +G++V   A A+KEL+ENSLDA +T++ + +K  G   +++ DNG G+  
Sbjct: 19  IDRKSVHQICSGQVVLSLATAMKELLENSLDAGATSVDVRLKEHGSHSIEVSDNGAGVEP 78

Query: 314 EDLGIVCERFTTSK 355
           ++   +  +  TSK
Sbjct: 79  QNFEALTLKHYTSK 92


>SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 773

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 25/78 (32%), Positives = 46/78 (58%)
 Frame = +2

Query: 122 IIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGT 301
           +IR L   + + + +G  +     A+ EL+ N+LDA ++ I + V     + +Q+ DNG+
Sbjct: 1   MIRHLDTGIRSHLRSGVAISTLTQAIDELVTNALDAGASCINVHVDIPSFR-VQVSDNGS 59

Query: 302 GIRNEDLGIVCERFTTSK 355
           GI  ++L I+ +R+ TSK
Sbjct: 60  GITKDNLEILGQRYCTSK 77


>SB_23452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/37 (40%), Positives = 29/37 (78%)
 Frame = +2

Query: 134 LSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNI 244
           L ++ V+RIA+ +++   ++A+KEL+EN+LDA + +I
Sbjct: 7   LPQDTVHRIASSQVITSVSSAVKELLENALDAGANSI 43


>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -1

Query: 327  IPKSSFLIPVPLSCICKNFKPPDFTVIMMLVDLASKLFSISSFNALAGLCTISPAAIRFT 148
            +P+S F + + + CI  +  P      ++L+  A+KL+     + +  + T   A +   
Sbjct: 970  VPESQFNVELVVQCIRVSENPQTHHQALLLLSTAAKLYPEKVLHNVMSIFTFMGANLLRQ 1029

Query: 147  TSSLSFRII 121
              S SF+II
Sbjct: 1030 DDSYSFQII 1038


>SB_6051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = -1

Query: 273 FKPPDFTVIMMLVDLASKLFSISSFNALAGLCTISPAAIRFTTSSLSFR 127
           FK   FT   ML D   K  ++S  +AL  L T+S A+ +FTT S +FR
Sbjct: 9   FKARKFT---MLSDALRKFTTLS--DALRKLTTLSDASRKFTTLSDAFR 52


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 92  ISTL*MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAK 232
           I T    +  I+ +L EE VN ++  ++ Q+    LKE +EN   A+
Sbjct: 11  IGTYAKKKRAILEELCEEKVNALSEIKLQQQNIRRLKEKVENEARAR 57



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 92   ISTL*MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAK 232
            I T    +  I+ +L EE VN ++  ++ Q+    LKE +EN   A+
Sbjct: 1033 IGTYAKKKRAILEELCEEKVNALSEIKLQQQNIRRLKEKVENEARAR 1079


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -1

Query: 198 NALAGL-CTISPAAIRFTTSSLSF 130
           NA  G+ CTI+PAAI  T S+L+F
Sbjct: 182 NAKTGIICTITPAAIDETASTLNF 205


>SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 248 ITVKSGGLKFLQIQ-DNGTGIRNEDLGIVCE 337
           +T  +G  K+ +IQ   G+G  N D+GI CE
Sbjct: 156 LTGLTGSRKYAEIQWVEGSGFVNSDVGIKCE 186


>SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)
          Length = 596

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 149 QLLHSVFELFLAHSFIRLKFIKFRLNFPFG 60
           +LL + F++     +++ KF++F LN P G
Sbjct: 390 KLLSNYFDVNYVTGYLKTKFMEFSLNCPIG 419


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +2

Query: 125  IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNI 244
            +++LSE++ N++AAG++ +    A+ +  E  +   +T +
Sbjct: 3840 MKELSEDLANKLAAGDLTEDEMRAIMDDHERQIANLATTL 3879


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,715
Number of Sequences: 59808
Number of extensions: 162876
Number of successful extensions: 367
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)