Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0323
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...   110   2e-25
Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical p...    69   1e-12
AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical ...    69   1e-12
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    32   0.14 
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...    28   2.2  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    27   2.9  
AC006608-9|AAF39760.1|  166|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine re...    27   3.9  
Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical p...    27   5.1  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    26   6.7  
AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical ...    26   6.7  

>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score =  110 bits (265), Expect = 2e-25
 Identities = 47/79 (59%), Positives = 65/79 (82%)
 Frame = +2

Query: 119 GIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNG 298
           G+I++L ++VVNR+AAGE++ RP NA+KEL+ENSLDA +T I++ +++GGLK LQ+ DNG
Sbjct: 2   GLIQRLPQDVVNRMAAGEVLARPCNAIKELVENSLDAGATEIMVNMQNGGLKLLQVSDNG 61

Query: 299 TGIRNEDLGIVCERFTTSK 355
            GI  ED  +VCERF TSK
Sbjct: 62  KGIEREDFALVCERFATSK 80


>Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 30/77 (38%), Positives = 53/77 (68%)
 Frame = +2

Query: 125 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 304
           I ++S+EV  R+   ++V   ++A+++LI+NS+DA ST I I VK+ G + +++QDNG+G
Sbjct: 6   IERISKEVAERLTTAQVVVSLSSAIRQLIDNSIDAGSTIIDIRVKNNGFESIEVQDNGSG 65

Query: 305 IRNEDLGIVCERFTTSK 355
           I   +   +C+  +TSK
Sbjct: 66  IEARNFDALCKPHSTSK 82


>AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 30/77 (38%), Positives = 53/77 (68%)
 Frame = +2

Query: 125 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 304
           I ++S+EV  R+   ++V   ++A+++LI+NS+DA ST I I VK+ G + +++QDNG+G
Sbjct: 6   IERISKEVAERLTTAQVVVSLSSAIRQLIDNSIDAGSTIIDIRVKNNGFESIEVQDNGSG 65

Query: 305 IRNEDLGIVCERFTTSK 355
           I   +   +C+  +TSK
Sbjct: 66  IEARNFDALCKPHSTSK 82


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +2

Query: 185 PANALKELIENSLDAKSTNIIIT-VKSGGLKFLQIQDNGTGIRNED 319
           P +A+ EL++N+ DA + ++ I  +     +FL+++D+G G+  E+
Sbjct: 33  PLSAIAELVDNAYDADARDLHIDFLDINNEQFLELRDDGLGMAREE 78


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/83 (18%), Positives = 37/83 (44%)
 Frame = +2

Query: 107 MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQI 286
           +N+P + +    +        +I     +A    IEN    +    + TV+    + ++ 
Sbjct: 92  INKPDVFKSPGSDTYIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVEEDENEDVEF 151

Query: 287 QDNGTGIRNEDLGIVCERFTTSK 355
           +++ TGI  +D+ +V  +  T++
Sbjct: 152 KEDSTGIEEKDIELVISQANTTR 174


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 232 FGIQAVFYKFF*CISWSLHYFTSSNTV 152
           FG  A+F     C  WSL YF  +  V
Sbjct: 177 FGFLAIFITLIACTLWSLGYFVQAKVV 203


>AC006608-9|AAF39760.1|  166|Caenorhabditis elegans Hypothetical
           protein C15F1.8 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 40  VNFQIDDPKGKFSLNLMNFNLINE*ARNNSKTE 138
           + F+I+D K K S  ++NFN I++ A N  ++E
Sbjct: 80  IQFEIEDTKKKISAAILNFN-ISKKANNAIRSE 111


>Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical
           protein F38E11.4 protein.
          Length = 751

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 203 ELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRNED 319
           ELI+NS+D + T    ++  G   F ++   GT +  ED
Sbjct: 406 ELIQNSVDEEETTSERSIAQGAANF-EVATTGTSVEFED 443


>AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein109 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = -1

Query: 342 NLSHTIPKSSFLIPVPLSCI--CKNFKPPDFTVIMMLVDLASKLFSISSFNALAG--LCT 175
           NL   +  SSFL   PL CI   K F P     I  L DL   L  +S+   +    LC 
Sbjct: 269 NLIIFLTISSFLADAPLGCIVMIKLFIPSGNRRIRFLTDLIVYLNILSTIIIMFRPILCF 328

Query: 174 ISPAAIRFTTSSLSFRIIPGSFIYKVEI 91
             P   R  T+   FR+   ++I  V I
Sbjct: 329 SMPRQYR-NTAKKFFRVKNATYINVVPI 355


>Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical
           protein T03F6.3 protein.
          Length = 267

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 125 IRKLSEEVVN---RIAAGEIVQRPANALKELIENSLDAKSTNIIIT 253
           I+ L+E+ +    R   G+I + P  AL   ++  +DA+   I+IT
Sbjct: 158 IKTLNEDTIQANARFFGGDITKVPTQALTVGVQTVMDAREVMILIT 203


>Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical
           protein F32D8.10 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -2

Query: 146 LLHSVFELFLAHSFIRLKFIKFRLNFP---FGSSIW 48
           LL S+F++F+A ++I +  ++  +NF    F  SIW
Sbjct: 84  LLLSLFDVFIAFAYIAVMSVRILVNFTSSVFLKSIW 119


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 196 CISWSLHYFTSSNTVHNFFTQFSNYS-WLIHL 104
           C  +   +FT+   V  FF++F N+S +LIHL
Sbjct: 236 CSRFWCSFFTTHKFVLLFFSEFQNFSAFLIHL 267


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 357 SLDVVNLSHTIPKSSFLIPVPLSCICKNFKPPDF 256
           S  V+ ++  +P + F +P+   C  K+F  P F
Sbjct: 445 SSKVMKIASKLPMTDFYLPIVFECYYKSFYGPVF 478


>AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical
           protein C07G3.8 protein.
          Length = 522

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 293 NGTGIRNEDLGIVCERFTTSK 355
           NGT I +EDL +  E FTT +
Sbjct: 209 NGTDIYSEDLSVQIELFTTKR 229



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 293 NGTGIRNEDLGIVCERFTTSK 355
           NGT I +EDL +  E FTT +
Sbjct: 462 NGTDIYSEDLSVQIELFTTKR 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,392,168
Number of Sequences: 27780
Number of extensions: 134408
Number of successful extensions: 315
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)